Variant report

Variant	rs4376776
Chromosome Location	chr1:45750295-45750296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11802089	0.85[EUR][1000 genomes]
rs11806438	0.83[EUR][1000 genomes]
rs11810239	0.88[EUR][1000 genomes]
rs13374935	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1938296	0.97[ASN][1000 genomes]
rs1938303	0.83[EUR][1000 genomes]
rs2186219	0.86[ASN][1000 genomes]
rs2997458	0.81[ASN][1000 genomes]
rs3121736	0.97[ASN][1000 genomes]
rs3128438	0.92[ASN][1000 genomes]
rs3128439	0.97[ASN][1000 genomes]
rs3128440	0.97[ASN][1000 genomes]
rs34134455	0.81[EUR][1000 genomes]
rs3850856	0.83[EUR][1000 genomes]
rs4233496	0.94[ASN][1000 genomes]
rs4233497	0.94[ASN][1000 genomes]
rs4376777	0.96[ASN][1000 genomes]
rs4603171	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4660295	0.81[EUR][1000 genomes]
rs4660839	0.81[EUR][1000 genomes]
rs4660841	0.81[EUR][1000 genomes]
rs55932948	0.91[EUR][1000 genomes]
rs56086213	0.91[EUR][1000 genomes]
rs56791336	0.88[EUR][1000 genomes]
rs57754814	0.91[EUR][1000 genomes]
rs58374842	0.83[EUR][1000 genomes]
rs58579477	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58934647	0.81[EUR][1000 genomes]
rs60115828	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61003126	0.91[EUR][1000 genomes]
rs61789780	0.83[EUR][1000 genomes]
rs61789781	0.83[EUR][1000 genomes]
rs61789815	0.92[EUR][1000 genomes]
rs61789823	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61789838	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61789841	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6429561	0.94[ASN][1000 genomes]
rs6429562	0.94[ASN][1000 genomes]
rs6429563	0.94[ASN][1000 genomes]
rs72684493	0.81[EUR][1000 genomes]
rs72686440	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002026	chr1:45187594-45758048	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	386 gene(s)	inside rSNPs	diseases
2	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
3	nsv1014509	chr1:45687523-45887501	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	nsv997548	chr1:45733596-45955845	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv534942	chr1:45733596-45955845	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	esv3406025	chr1:45739908-45763848	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45741000-45750800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:45750200-45750600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:45750200-45750800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:45750200-45750800	Flanking Active TSS	K562	blood

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