Variant report

Variant	rs3125046
Chromosome Location	chr1:221071036-221071037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10495155	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11578466	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11580070	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11588625	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1572384	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2738751	0.86[EUR][1000 genomes]
rs2738756	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2784250	0.85[EUR][1000 genomes]
rs2784252	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2784254	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2784273	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2807862	0.94[EUR][1000 genomes]
rs2807866	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41369048	0.83[EUR][1000 genomes]
rs950635	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221069000-221079400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:221069200-221077400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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