Variant report

Variant	rs2807862
Chromosome Location	chr1:221064481-221064482
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:221059069..221061749-chr1:221063321..221065597,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10495155	0.98[EUR][1000 genomes]
rs11578466	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs11580070	0.98[EUR][1000 genomes]
rs11588625	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1537804	1.00[ASN][1000 genomes]
rs1537805	1.00[ASN][1000 genomes]
rs1572384	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs2738751	0.90[EUR][1000 genomes]
rs2738756	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2784250	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784252	0.99[EUR][1000 genomes]
rs2784254	0.99[EUR][1000 genomes]
rs2784273	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs2807866	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs3125046	0.94[EUR][1000 genomes]
rs41369048	0.81[EUR][1000 genomes]
rs4846672	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs58040980	1.00[ASN][1000 genomes]
rs60458871	0.94[ASN][1000 genomes]
rs60757003	0.88[ASN][1000 genomes]
rs6682092	1.00[ASN][1000 genomes]
rs73108360	1.00[ASN][1000 genomes]
rs949994	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs950635	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv1798350	chr1:221020278-221069740	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221061200-221064600	Weak transcription	Spleen	Spleen
2	chr1:221061800-221064600	Weak transcription	Pancreas	Pancrea
3	chr1:221062000-221065600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr1:221062200-221066200	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:221064000-221065000	Bivalent Enhancer	Adipose Nuclei	Adipose
6	chr1:221064000-221067000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
7	chr1:221064200-221064600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr1:221064200-221064600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
9	chr1:221064200-221065000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
10	chr1:221064200-221065200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
11	chr1:221064200-221065600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:221064400-221064600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
13	chr1:221064400-221064600	Bivalent Enhancer	Primary B cells from cord blood	blood
14	chr1:221064400-221064600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:221064400-221064600	Bivalent Enhancer	Fetal Brain Female	brain
16	chr1:221064400-221064800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
17	chr1:221064400-221064800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr1:221064400-221064800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:221064400-221065400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
20	chr1:221064400-221065400	Bivalent Enhancer	HUVEC	blood vessel
21	chr1:221064400-221065600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr1:221064400-221065600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr1:221064400-221067600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links