Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1537804	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1537805	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17009074	1.00[EUR][1000 genomes]
rs2484707	1.00[EUR][1000 genomes]
rs2784250	0.94[ASN][1000 genomes]
rs2807862	0.94[ASN][1000 genomes]
rs4846672	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55955117	1.00[EUR][1000 genomes]
rs56953379	1.00[EUR][1000 genomes]
rs57651577	1.00[EUR][1000 genomes]
rs58040980	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60757003	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6682092	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73097473	1.00[EUR][1000 genomes]
rs73102740	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73108360	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73108374	1.00[EUR][1000 genomes]
rs7550867	1.00[EUR][1000 genomes]
rs949994	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs950635	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221080600-221090200	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:221082600-221087600	Weak transcription	Liver	Liver
3	chr1:221086800-221087800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:221087000-221089200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:221087200-221087800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr1:221087200-221089200	Enhancers	Primary hematopoietic stem cells	blood
7	chr1:221087400-221089000	Bivalent Enhancer	HepG2	liver
8	chr1:221087400-221090000	Enhancers	Primary monocytes fromperipheralblood	blood

Quick Search: