Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1537804	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1537805	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17009057	0.82[ASN][1000 genomes]
rs17009074	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2484707	1.00[EUR][1000 genomes]
rs2784250	0.88[ASN][1000 genomes]
rs2807862	0.88[ASN][1000 genomes]
rs4846672	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55955117	1.00[EUR][1000 genomes]
rs56953379	1.00[EUR][1000 genomes]
rs57651577	1.00[EUR][1000 genomes]
rs58040980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60458871	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6682092	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73097473	1.00[EUR][1000 genomes]
rs73102740	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73108360	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73108374	1.00[EUR][1000 genomes]
rs7550867	1.00[EUR][1000 genomes]
rs949994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs950635	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221080600-221090200	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:221087400-221090000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:221087600-221089400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:221087600-221089600	Enhancers	Liver	Liver
5	chr1:221087800-221089800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr1:221089000-221089600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
7	chr1:221089000-221096200	Weak transcription	Spleen	Spleen
8	chr1:221089200-221092200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:221089200-221093800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:221089200-221094800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:221089200-221095400	Weak transcription	Fetal Muscle Leg	muscle

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