Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1537804	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1537805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009074	1.00[EUR][1000 genomes]
rs2484707	1.00[EUR][1000 genomes]
rs2784250	1.00[ASN][1000 genomes]
rs2807862	1.00[ASN][1000 genomes]
rs4846672	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55955117	1.00[EUR][1000 genomes]
rs56953379	1.00[EUR][1000 genomes]
rs57651577	1.00[EUR][1000 genomes]
rs58040980	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60458871	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60757003	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6682092	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73097473	1.00[EUR][1000 genomes]
rs73102740	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73108374	1.00[EUR][1000 genomes]
rs7550867	1.00[EUR][1000 genomes]
rs949994	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs950635	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221069000-221079400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:221069200-221077400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:221074800-221076400	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:221075000-221076400	Enhancers	NHDF-Ad	bronchial
5	chr1:221075000-221076600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:221075000-221076800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:221075200-221076600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:221075400-221076800	Enhancers	Osteobl	bone
9	chr1:221076000-221076400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:221076000-221076400	Enhancers	NHLF	lung
11	chr1:221076000-221077200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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