Variant report

Variant	rs3125265
Chromosome Location	chr6:54854851-54854852
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs239812	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs239825	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs41271312	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5309	chr6:54834971-54855729	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54847000-54856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54852600-54855000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:54853000-54857000	Weak transcription	HMEC	breast
4	chr6:54853400-54858400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:54854000-54856400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:54854800-54855000	Enhancers	Stomach Mucosa	stomach
7	chr6:54854800-54855200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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