Variant report

Variant	rs3128387
Chromosome Location	chr7:112217467-112217468
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11974313	1.00[ASN][1000 genomes]
rs17159704	1.00[JPT][hapmap]
rs3095043	1.00[JPT][hapmap]
rs3128376	1.00[JPT][hapmap]
rs3128389	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128405	0.84[AFR][1000 genomes]
rs62473831	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62476687	0.84[EUR][1000 genomes]
rs62476689	0.82[EUR][1000 genomes]
rs6970941	0.89[CEU][hapmap]
rs73715656	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112213200-112220000	Weak transcription	Right Ventricle	heart
2	chr7:112214000-112221600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:112216800-112218200	Weak transcription	Fetal Heart	heart
4	chr7:112217000-112219400	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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