Variant report
| Variant | rs62473831 |
|---|---|
| Chromosome Location | chr7:112260561-112260562 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:7)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
(count:7 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C7orf53-2 | chr7:112260463-112260699 | XLOC_006210 |
| 2 | lnc-C7orf53-2 | chr7:112260463-112260814 | XLOC_006210 |
| 3 | lnc-C7orf53-2 | chr7:112260463-112260699 | XLOC_006210 |
| 4 | lnc-C7orf53-2 | chr7:112260463-112260698 | XLOC_006210 |
| 5 | lnc-C7orf53-2 | chr7:112260463-112260704 | NR_110159 |
| 6 | lnc-C7orf53-2 | chr7:112260463-112260704 | NR_110160 |
| 7 | lnc-C7orf53-2 | chr7:112260462-112260814 | NONHSAT122792 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs3128387 | 0.95[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs3128389 | 0.87[AMR][1000 genomes] |
| rs43095 | 0.82[AFR][1000 genomes] |
| rs62473829 | 0.83[EUR][1000 genomes] |
| rs62473833 | 0.84[EUR][1000 genomes] |
| rs73715656 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| 2 | nsv889055 | chr7:112174089-112353440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv970931 | chr7:112259987-112260700 | Enhancers | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
