Variant report
| Variant | rs43095 |
|---|---|
| Chromosome Location | chr7:112254557-112254558 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:112253801..112256615-chr7:112261041..112263781,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000223646 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs1014362 | 0.82[ASN][1000 genomes] |
| rs1234347 | 0.84[ASN][1000 genomes] |
| rs1234380 | 0.85[ASN][1000 genomes] |
| rs1234381 | 0.85[ASN][1000 genomes] |
| rs1234382 | 0.88[ASN][1000 genomes] |
| rs1234385 | 0.85[ASN][1000 genomes] |
| rs1237913 | 0.88[ASN][1000 genomes] |
| rs12538661 | 0.84[ASN][1000 genomes] |
| rs1634108 | 0.84[ASN][1000 genomes] |
| rs1634112 | 0.82[ASN][1000 genomes] |
| rs1796504 | 0.85[ASN][1000 genomes] |
| rs2157941 | 0.84[ASN][1000 genomes] |
| rs2905286 | 0.84[ASN][1000 genomes] |
| rs2952676 | 0.81[ASN][1000 genomes] |
| rs2952677 | 0.82[ASN][1000 genomes] |
| rs2952689 | 0.84[ASN][1000 genomes] |
| rs2952690 | 0.84[ASN][1000 genomes] |
| rs2952691 | 0.81[ASN][1000 genomes] |
| rs2966471 | 0.87[ASN][1000 genomes] |
| rs2966472 | 0.84[ASN][1000 genomes] |
| rs2966478 | 0.94[ASN][1000 genomes] |
| rs2966481 | 0.84[ASN][1000 genomes] |
| rs2966484 | 0.81[ASN][1000 genomes] |
| rs2966488 | 0.84[ASN][1000 genomes] |
| rs3095022 | 0.84[ASN][1000 genomes] |
| rs3111436 | 0.89[ASN][1000 genomes] |
| rs3111439 | 0.84[ASN][1000 genomes] |
| rs3111441 | 0.84[ASN][1000 genomes] |
| rs3128400 | 0.84[ASN][1000 genomes] |
| rs3128401 | 0.84[ASN][1000 genomes] |
| rs3128402 | 0.87[ASN][1000 genomes] |
| rs43091 | 0.97[ASN][1000 genomes] |
| rs43096 | 0.97[ASN][1000 genomes] |
| rs62473831 | 0.82[AFR][1000 genomes] |
| rs728462 | 0.87[ASN][1000 genomes] |
| rs73715656 | 0.83[AFR][1000 genomes] |
| rs7779682 | 0.87[ASN][1000 genomes] |
| rs7787496 | 0.87[ASN][1000 genomes] |
| rs9641488 | 0.87[ASN][1000 genomes] |
| rs9641490 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| 2 | nsv889055 | chr7:112174089-112353440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
