Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1234380	0.92[ASN][1000 genomes]
rs1234381	0.92[ASN][1000 genomes]
rs1234382	0.93[ASN][1000 genomes]
rs1234385	0.95[ASN][1000 genomes]
rs1237913	0.93[ASN][1000 genomes]
rs12538661	0.97[ASN][1000 genomes]
rs1634108	0.94[ASN][1000 genomes]
rs1634112	0.92[ASN][1000 genomes]
rs1796504	0.95[ASN][1000 genomes]
rs2188549	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2905286	0.97[ASN][1000 genomes]
rs2952676	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2952677	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2952689	0.97[ASN][1000 genomes]
rs2952690	0.97[ASN][1000 genomes]
rs2952691	0.94[ASN][1000 genomes]
rs2966471	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2966472	0.97[ASN][1000 genomes]
rs2966478	0.89[ASN][1000 genomes]
rs2966481	0.97[ASN][1000 genomes]
rs2966484	0.94[ASN][1000 genomes]
rs2966488	0.97[ASN][1000 genomes]
rs43091	0.84[ASN][1000 genomes]
rs43095	0.84[ASN][1000 genomes]
rs43096	0.84[ASN][1000 genomes]
rs4730558	0.91[ASN][1000 genomes]
rs7779682	0.94[ASN][1000 genomes]
rs7785340	0.80[ASN][1000 genomes]
rs7787496	0.94[ASN][1000 genomes]
rs9641488	0.94[ASN][1000 genomes]
rs9641490	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112285600-112288600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:112286400-112287400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:112286400-112287400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:112286600-112287400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:112286600-112287400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:112286600-112287400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:112286600-112287400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:112286600-112287400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:112286600-112287400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:112286600-112287400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:112286600-112287400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:112286600-112287400	ZNF genes & repeats	Fetal Stomach	stomach
13	chr7:112286800-112287200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:112286800-112287200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:112286800-112287400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:112286800-112287400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr7:112287000-112287400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr7:112287000-112287400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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