Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112262666..112264458-chr7:112266284..112269273,2	K562	blood:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1234347	0.86[CHB][hapmap]
rs1234380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1234381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1234385	0.97[ASN][1000 genomes]
rs1237913	1.00[ASN][1000 genomes]
rs12538661	0.93[ASN][1000 genomes]
rs1634108	0.96[ASN][1000 genomes]
rs1634112	0.94[ASN][1000 genomes]
rs1796504	0.97[ASN][1000 genomes]
rs2157941	0.93[ASN][1000 genomes]
rs2188549	0.88[ASN][1000 genomes]
rs2905286	0.93[ASN][1000 genomes]
rs2952676	0.90[ASN][1000 genomes]
rs2952677	0.91[ASN][1000 genomes]
rs2952689	0.93[ASN][1000 genomes]
rs2952690	0.93[ASN][1000 genomes]
rs2952691	0.90[ASN][1000 genomes]
rs2966471	0.96[ASN][1000 genomes]
rs2966472	0.93[ASN][1000 genomes]
rs2966478	1.00[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs2966481	0.93[ASN][1000 genomes]
rs2966484	0.90[ASN][1000 genomes]
rs2966488	0.93[ASN][1000 genomes]
rs3111439	0.86[CHB][hapmap]
rs3128400	0.84[CHB][hapmap]
rs3128404	0.86[CHB][hapmap]
rs43091	0.85[ASN][1000 genomes]
rs43095	0.88[ASN][1000 genomes]
rs43096	0.85[ASN][1000 genomes]
rs4730558	0.87[ASN][1000 genomes]
rs7779682	0.96[ASN][1000 genomes]
rs7785340	0.82[ASN][1000 genomes]
rs7787496	0.96[ASN][1000 genomes]
rs9641488	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9641490	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112261600-112264000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:112262200-112263000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:112262800-112263000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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