Variant report

Variant	rs1234380
Chromosome Location	chr7:112262301-112262302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1234347	0.86[CHB][hapmap]
rs1234381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1234382	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1234385	0.94[ASN][1000 genomes]
rs1237913	0.97[ASN][1000 genomes]
rs12538661	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1634108	0.93[ASN][1000 genomes]
rs1634112	0.94[ASN][1000 genomes]
rs1796504	0.94[ASN][1000 genomes]
rs2157941	0.92[ASN][1000 genomes]
rs2188549	0.91[ASN][1000 genomes]
rs2905286	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2952676	0.92[ASN][1000 genomes]
rs2952677	0.94[ASN][1000 genomes]
rs2952689	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2952690	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2952691	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2966471	0.93[ASN][1000 genomes]
rs2966472	0.95[ASN][1000 genomes]
rs2966478	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs2966481	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2966484	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2966488	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3111436	0.81[ASN][1000 genomes]
rs3111439	0.86[CHB][hapmap]
rs3128400	0.84[CHB][hapmap]
rs3128404	0.86[CHB][hapmap]
rs43091	0.88[ASN][1000 genomes]
rs43095	0.85[ASN][1000 genomes]
rs43096	0.88[ASN][1000 genomes]
rs4730558	0.89[ASN][1000 genomes]
rs7779682	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7785340	0.85[ASN][1000 genomes]
rs7787496	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9641488	0.98[ASN][1000 genomes]
rs9641490	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112261600-112262600	Enhancers	K562	blood
2	chr7:112261600-112264000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:112262200-112262600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:112262200-112262800	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr7:112262200-112262800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:112262200-112263000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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