Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1234380	0.85[ASN][1000 genomes]
rs1234381	0.85[ASN][1000 genomes]
rs1234382	0.82[ASN][1000 genomes]
rs1237913	0.82[ASN][1000 genomes]
rs12538661	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2157941	0.80[ASN][1000 genomes]
rs2905286	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2952676	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2952677	0.82[ASN][1000 genomes]
rs2952689	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2952690	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2952691	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2966471	0.81[ASN][1000 genomes]
rs2966472	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2966481	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2966484	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2966488	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7779682	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7787496	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9641488	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9641490	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112267800-112270200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:112268600-112271800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:112268800-112269800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:112269000-112270000	Weak transcription	HUVEC	blood vessel
5	chr7:112269400-112270200	Enhancers	Fetal Lung	lung
6	chr7:112269400-112271600	Enhancers	Fetal Stomach	stomach

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