Variant report

Variant	rs3111441
Chromosome Location	chr7:112207463-112207464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1014362	0.98[ASN][1000 genomes]
rs1234347	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3095022	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095040	0.82[AMR][1000 genomes]
rs3095055	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3095056	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3111436	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3111439	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128400	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128401	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128402	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3128403	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3128404	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3128407	0.83[EUR][1000 genomes]
rs3128421	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs43091	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs43095	0.84[ASN][1000 genomes]
rs43096	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs728462	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112205600-112207800	Enhancers	Fetal Heart	heart
2	chr7:112206200-112207800	Enhancers	Brain Germinal Matrix	brain
3	chr7:112206400-112207600	Enhancers	Colon Smooth Muscle	Colon
4	chr7:112206400-112207800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:112206400-112207800	Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr7:112206600-112207800	Enhancers	Small Intestine	intestine
7	chr7:112207200-112207600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
8	chr7:112207200-112211200	Weak transcription	Fetal Intestine Large	intestine
9	chr7:112207200-112211200	Weak transcription	Fetal Intestine Small	intestine
10	chr7:112207200-112211600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:112207400-112207600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:112207400-112207600	Enhancers	Fetal Brain Female	brain
13	chr7:112207400-112207800	Enhancers	Aorta	Aorta
14	chr7:112207400-112208000	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr7:112207400-112212000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:112207400-112213200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:112207400-112216400	Weak transcription	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links