Variant report
| Variant | rs3095040 |
|---|---|
| Chromosome Location | chr7:112166429-112166430 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:112164611..112166723-chr7:112417146..112418766,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000146802 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs1234347 | 0.82[CEU][hapmap] |
| rs3095055 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs3095056 | 0.88[AMR][1000 genomes] |
| rs3111436 | 0.81[AMR][1000 genomes] |
| rs3111441 | 0.82[AMR][1000 genomes] |
| rs3128404 | 0.81[AMR][1000 genomes] |
| rs3128421 | 0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3128428 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs43091 | 0.82[AMR][1000 genomes] |
| rs43096 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
