Variant report

Variant	rs3095056
Chromosome Location	chr7:112188915-112188916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1234347	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3095022	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3095040	0.88[AMR][1000 genomes]
rs3095055	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3111439	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3111441	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3128400	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3128401	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3128402	0.89[EUR][1000 genomes]
rs3128403	0.81[EUR][1000 genomes]
rs3128404	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3128421	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3128428	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv1801382	chr7:112167436-112205264	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112188000-112189200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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