Variant report

Variant	rs728462
Chromosome Location	chr7:112217868-112217869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1014362	0.95[ASN][1000 genomes]
rs1234347	0.97[ASN][1000 genomes]
rs2966478	0.81[ASN][1000 genomes]
rs3095022	0.94[ASN][1000 genomes]
rs3111436	0.91[ASN][1000 genomes]
rs3111439	0.94[ASN][1000 genomes]
rs3111441	0.94[ASN][1000 genomes]
rs3128400	0.94[ASN][1000 genomes]
rs3128401	0.94[ASN][1000 genomes]
rs3128402	0.91[ASN][1000 genomes]
rs3128403	0.88[ASN][1000 genomes]
rs3128404	0.89[ASN][1000 genomes]
rs43091	0.84[ASN][1000 genomes]
rs43095	0.87[ASN][1000 genomes]
rs43096	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112213200-112220000	Weak transcription	Right Ventricle	heart
2	chr7:112214000-112221600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:112216800-112218200	Weak transcription	Fetal Heart	heart
4	chr7:112217000-112219400	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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