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Variant report
Variant
rs3128429
Chromosome Location
chr7:112156003-112156004
allele
A/C
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:5)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
CEBPB
chr7:112156002-112156027
K562
blood:
n/a
n/a
2
RAD21
chr7:112155998-112156370
HCT-116
colon:
n/a
n/a
3
CEBPB
chr7:112155971-112156187
HepG2
liver:
n/a
n/a
4
CEBPB
chr7:112155871-112156154
A549
lung:
n/a
n/a
5
CTCF
chr7:112156003-112156360
MCF-7
breast:
n/a
n/a
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr7:112118477..112121332-chr7:112154605..112156995,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
NPM1P14
TF binding region
ENSG00000181016
Chromatin interaction
Extended variants information (count: 2 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:1)
rs_ID
r
2
[population]
rs62474615
0.84[ASN][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv531436
chr7:111856171-112585407
Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
105 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links