Variant report

Variant	rs3128844
Chromosome Location	chr6:29459260-29459261
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1002187	0.81[EUR][1000 genomes]
rs1362075	0.84[EUR][1000 genomes]
rs1592412	0.84[EUR][1000 genomes]
rs2074464	0.96[EUR][1000 genomes]
rs2107191	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3094561	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3094564	0.83[EUR][1000 genomes]
rs3094572	0.84[EUR][1000 genomes]
rs3094573	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3094574	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3117194	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3128854	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3130849	0.82[EUR][1000 genomes]
rs3130852	0.84[EUR][1000 genomes]
rs3130854	0.83[EUR][1000 genomes]
rs3131019	0.84[EUR][1000 genomes]
rs3131021	0.81[EUR][1000 genomes]
rs734959	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29457200-29459400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:29457200-29461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:29457800-29459800	Enhancers	Primary hematopoietic stem cells	blood
4	chr6:29457800-29459800	Enhancers	K562	blood
5	chr6:29459000-29459600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:29459000-29461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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