Variant report

Variant rs3129012
Chromosome Location chr6:29988642-29988643
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:29974800-30002400 Weak transcription Dnd41 blood
2 chr6:29975200-30027800 Weak transcription Aorta Aorta
3 chr6:29975600-30027800 Weak transcription Right Ventricle heart
4 chr6:29975800-30027800 Weak transcription Gastric stomach
5 chr6:29976200-30001800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr6:29976600-30023000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr6:29976800-29990000 Weak transcription NHLF lung
8 chr6:29976800-30000800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr6:29977000-30002000 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr6:29977000-30002000 Weak transcription Primary T helper cells PMA-I stimulated --
11 chr6:29977200-29991200 Weak transcription Placenta Placenta
12 chr6:29977200-30000400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
13 chr6:29977200-30003800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr6:29977200-30024600 Weak transcription Brain Anterior Caudate brain
15 chr6:29977200-30027600 Weak transcription Primary T helper naive cells from peripheral blood blood
16 chr6:29977200-30027800 Weak transcription Fetal Intestine Small intestine
17 chr6:29977400-29990000 Weak transcription Brain Germinal Matrix brain
18 chr6:29978000-29991400 Weak transcription Fetal Adrenal Gland Adrenal Gland
19 chr6:29979000-30027600 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr6:29979400-30024600 Weak transcription Brain Inferior Temporal Lobe brain
21 chr6:29979600-30022800 Weak transcription Ovary ovary
22 chr6:29979800-30027800 Weak transcription Pancreas Pancrea
23 chr6:29980200-30012000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr6:29981200-30023000 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr6:29981800-30010600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
26 chr6:29982800-30009800 Weak transcription Psoas Muscle Psoas
27 chr6:29982800-30022800 Weak transcription Fetal Muscle Leg muscle
28 chr6:29983400-30012400 Weak transcription NHEK skin
29 chr6:29984600-30023400 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr6:29984800-29992800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr6:29985000-29989200 Strong transcription Liver Liver
32 chr6:29985000-30024600 Weak transcription Brain Angular Gyrus brain
33 chr6:29985400-30008200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
34 chr6:29985600-29989600 Strong transcription Primary T cells from cord blood blood
35 chr6:29986200-29989400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr6:29986400-29989000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr6:29987000-29988800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
38 chr6:29987000-29989000 Strong transcription Skeletal Muscle Male skeletal muscle
39 chr6:29987000-29989400 Strong transcription Primary T regulatory cells fromperipheralblood blood
40 chr6:29987000-29989600 Strong transcription Primary T helper cells fromperipheralblood blood
41 chr6:29987200-29988800 Strong transcription Brain Hippocampus Middle brain
42 chr6:29987400-30001600 Weak transcription Primary B cells from cord blood blood
43 chr6:29987600-29989000 Enhancers Primary monocytes fromperipheralblood blood
44 chr6:29987800-29988800 Enhancers Spleen Spleen
45 chr6:29987800-29989000 Enhancers Primary B cells from peripheral blood blood
46 chr6:29987800-29996000 Weak transcription Lung lung
47 chr6:29987800-30010600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr6:29987800-30024800 Weak transcription Fetal Intestine Large intestine
49 chr6:29988000-29988800 Strong transcription Primary T cells fromperipheralblood blood
50 chr6:29988000-29989000 Enhancers GM12878-XiMat blood

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