Variant report

Variant	rs28780084
Chromosome Location	chr6:30081742-30081743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1264709	0.91[ASN][1000 genomes]
rs1632926	0.91[ASN][1000 genomes]
rs259926	0.91[ASN][1000 genomes]
rs28780085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28780087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28780088	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28780089	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28780090	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28780092	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3129012	0.91[ASN][1000 genomes]
rs356959	0.91[ASN][1000 genomes]
rs356971	0.91[ASN][1000 genomes]
rs369073	0.91[ASN][1000 genomes]
rs9261259	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884055	chr6:30078275-30087776	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30080000-30081800	Enhancers	Liver	Liver
2	chr6:30080200-30082400	Enhancers	HepG2	liver
3	chr6:30080600-30081800	Flanking Active TSS	GM12878-XiMat	blood
4	chr6:30080800-30082800	Enhancers	Fetal Intestine Large	intestine
5	chr6:30080800-30082800	Enhancers	Fetal Intestine Small	intestine
6	chr6:30081200-30082200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr6:30081200-30082200	Flanking Active TSS	A549	lung
8	chr6:30081200-30082400	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr6:30081400-30081800	Flanking Active TSS	Stomach Mucosa	stomach
10	chr6:30081400-30082000	Enhancers	Duodenum Mucosa	Duodenum
11	chr6:30081400-30082400	Enhancers	Hela-S3	cervix
12	chr6:30081600-30082200	Enhancers	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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