Variant report

Variant	rs28780088
Chromosome Location	chr6:30114289-30114290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28780084	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28780085	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28780087	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28780089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28780090	1.00[ASN][1000 genomes]
rs28780092	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28780096	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28780098	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30112800-30119200	Strong transcription	Placenta	Placenta
2	chr6:30112800-30120800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:30113000-30114600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:30113000-30119600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:30113600-30114800	Genic enhancers	Fetal Intestine Small	intestine
6	chr6:30113800-30118600	Weak transcription	Fetal Intestine Large	intestine
7	chr6:30114200-30114400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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