Variant report

Variant	rs28780096
Chromosome Location	chr6:30280125-30280126
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30262142..30264727-chr6:30279624..30281654,2	K562	blood:
2	chr6:30279320..30281326-chr6:30292581..30294397,2	MCF-7	breast:
3	chr6:30271978..30277366-chr6:30278037..30280877,7	MCF-7	breast:
4	chr6:30279858..30281828-chr6:30312382..30314728,2	MCF-7	breast:
5	chr6:30273946..30275909-chr6:30277394..30280715,4	K562	blood:

Variant related genes	Relation type
ENSG00000270604	Chromatin interaction
ENSG00000241370	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000231074	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17475879	1.00[AMR][1000 genomes]
rs28780087	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28780088	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28780089	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28780090	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28780092	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28780098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30256200-30292000	Weak transcription	Fetal Heart	heart
2	chr6:30257600-30292800	Weak transcription	Fetal Kidney	kidney
3	chr6:30259000-30287200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:30262600-30292400	Weak transcription	Pancreas	Pancrea
5	chr6:30262800-30280200	Weak transcription	HUVEC	blood vessel
6	chr6:30262800-30280400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:30262800-30283200	Weak transcription	NHLF	lung
8	chr6:30262800-30290200	Weak transcription	Spleen	Spleen
9	chr6:30263000-30281400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:30263000-30282000	Weak transcription	Psoas Muscle	Psoas
11	chr6:30263000-30293000	Weak transcription	Brain Substantia Nigra	brain
12	chr6:30263200-30280200	Weak transcription	HSMMtube	muscle
13	chr6:30263200-30280600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:30263200-30281600	Weak transcription	Right Ventricle	heart
15	chr6:30263800-30280800	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:30264000-30280800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:30264200-30280200	Weak transcription	NH-A	brain
18	chr6:30264200-30286600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:30264200-30289800	Weak transcription	Gastric	stomach
20	chr6:30264400-30285200	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:30269200-30285800	Strong transcription	Dnd41	blood
22	chr6:30270400-30283800	Weak transcription	Colonic Mucosa	Colon
23	chr6:30270600-30292600	Weak transcription	Esophagus	oesophagus
24	chr6:30270800-30280200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:30270800-30281600	Weak transcription	Fetal Lung	lung
26	chr6:30270800-30292200	Weak transcription	NHDF-Ad	bronchial
27	chr6:30271000-30281000	Weak transcription	Lung	lung
28	chr6:30271000-30281600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:30271000-30292400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:30271000-30292800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:30271200-30280200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr6:30271400-30280400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:30271400-30280800	Weak transcription	Brain Angular Gyrus	brain
34	chr6:30271400-30281000	Weak transcription	Ovary	ovary
35	chr6:30271400-30281400	Weak transcription	Brain Anterior Caudate	brain
36	chr6:30271400-30282200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:30271400-30291400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:30271800-30280400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr6:30272200-30280600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:30272200-30292200	Weak transcription	Fetal Brain Male	brain
41	chr6:30272400-30289600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:30273200-30281600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:30273400-30281000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:30273800-30281400	Weak transcription	Brain Germinal Matrix	brain
45	chr6:30274000-30280600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr6:30274400-30285400	Strong transcription	Primary B cells from cord blood	blood
47	chr6:30274600-30281000	Weak transcription	Aorta	Aorta
48	chr6:30274600-30292200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr6:30274600-30292600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:30275000-30281400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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