Variant report

Variant rs3129886
Chromosome Location chr6:32410576-32410577
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:34 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:32407200-32410600 Active TSS Duodenum Smooth Muscle Duodenum
2 chr6:32407400-32411000 Active TSS Rectal Mucosa Donor 29 rectum
3 chr6:32407800-32415000 Weak transcription Gastric stomach
4 chr6:32408000-32410600 Active TSS Primary Natural Killer cells fromperipheralblood blood
5 chr6:32408000-32412800 Weak transcription Right Ventricle heart
6 chr6:32408200-32410800 Weak transcription Small Intestine intestine
7 chr6:32408200-32411400 Transcr. at gene 5' and 3' Primary B cells from peripheral blood blood
8 chr6:32408200-32411800 Transcr. at gene 5' and 3' Monocytes-CD14+_RO01746 blood
9 chr6:32408200-32412200 Transcr. at gene 5' and 3' Primary B cells from cord blood blood
10 chr6:32408600-32411000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr6:32408600-32415200 Weak transcription Stomach Mucosa stomach
12 chr6:32408800-32410800 Weak transcription Brain Anterior Caudate brain
13 chr6:32408800-32411000 Weak transcription Lung lung
14 chr6:32408800-32411800 Weak transcription Liver Liver
15 chr6:32408800-32415600 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr6:32409200-32410600 Transcr. at gene 5' and 3' Primary monocytes fromperipheralblood blood
17 chr6:32409200-32412200 Transcr. at gene 5' and 3' GM12878-XiMat blood
18 chr6:32409200-32413000 Weak transcription Primary T cells fromperipheralblood blood
19 chr6:32409400-32412200 Weak transcription Colonic Mucosa Colon
20 chr6:32409600-32411200 Weak transcription Primary T regulatory cells fromperipheralblood blood
21 chr6:32410000-32410600 Transcr. at gene 5' and 3' Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr6:32410000-32410800 Transcr. at gene 5' and 3' Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr6:32410000-32411800 Weak transcription Thymus Thymus
24 chr6:32410000-32412600 Strong transcription Fetal Thymus thymus
25 chr6:32410000-32413200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
26 chr6:32410200-32410600 Active TSS Brain Substantia Nigra brain
27 chr6:32410200-32410600 Transcr. at gene 5' and 3' Duodenum Mucosa Duodenum
28 chr6:32410200-32410600 Active TSS Rectal Mucosa Donor 31 rectum
29 chr6:32410200-32411800 Genic enhancers Spleen Spleen
30 chr6:32410200-32413200 Strong transcription Primary hematopoietic stem cells short term culture blood
31 chr6:32410400-32410600 Transcr. at gene 5' and 3' Adipose Nuclei Adipose
32 chr6:32410400-32410600 Enhancers Left Ventricle heart
33 chr6:32410400-32413200 Strong transcription Primary hematopoietic stem cells blood
34 chr6:32410400-32413400 Weak transcription Brain Hippocampus Middle brain

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