Variant report

Variant	rs3130463
Chromosome Location	chr6:31165962-31165963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr6:31165432-31166196	GM12878	blood:	n/a	chr6:31166070-31166081
2	ZBTB7A	chr6:31165693-31166332	K562	blood:	n/a	n/a
3	POLR2A	chr6:31164617-31166158	GM12878	blood:	n/a	n/a
4	SMC3	chr6:31164701-31166097	Hela-S3	cervix:	n/a	n/a
5	TBP	chr6:31165291-31166100	K562	blood:	n/a	n/a
6	MAZ	chr6:31164752-31166133	K562	blood:	n/a	chr6:31165518-31165528 chr6:31164872-31164883
7	TEAD4	chr6:31165228-31166078	K562	blood:	n/a	n/a
8	POLR2A	chr6:31164791-31166135	GM15510	blood:	n/a	n/a
9	REST	chr6:31164571-31166253	H1-neurons	neurons:	n/a	chr6:31165699-31165712 chr6:31165878-31165885
10	RCOR1	chr6:31165459-31166114	HepG2	liver:	n/a	n/a
11	POLR2A	chr6:31165215-31166148	HCT-116	colon:	n/a	n/a
12	TFAP2C	chr6:31164706-31166086	Hela-S3	cervix:	n/a	n/a
13	MYC	chr6:31165527-31166138	NB4	blood:	n/a	n/a
14	ELF1	chr6:31165202-31166176	K562	blood:	n/a	chr6:31165441-31165453
15	YY1	chr6:31164750-31166153	K562	blood:	n/a	n/a
16	POLR2A	chr6:31165301-31166093	K562	blood:	n/a	n/a
17	SIN3AK20	chr6:31165165-31166112	PANC-1	pancreas:	n/a	n/a
18	PML	chr6:31165148-31166215	K562	blood:	n/a	n/a
19	MYC	chr6:31165506-31166023	HepG2	liver:	n/a	chr6:31165518-31165528
20	TAL1	chr6:31165385-31166099	K562	blood:	n/a	n/a
21	GABPA	chr6:31165218-31166010	K562	blood:	n/a	n/a
22	ELF1	chr6:31165288-31166027	HepG2	liver:	n/a	chr6:31165441-31165453
23	EGR1	chr6:31165183-31166304	HCT-116	colon:	n/a	chr6:31165502-31165515 chr6:31165502-31165515 chr6:31165700-31165715 chr6:31165504-31165514 chr6:31165498-31165520 chr6:31165514-31165528
24	GABPA	chr6:31164702-31166016	MCF-7	breast:	n/a	n/a
25	ZNF143	chr6:31165415-31166070	GM12878	blood:	n/a	chr6:31165447-31165457 chr6:31165803-31165822
26	MXI1	chr6:31165460-31166143	Hela-S3	cervix:	n/a	n/a
27	CEBPB	chr6:31165489-31166192	GM12878	blood:	n/a	chr6:31165863-31165880
28	PBX3	chr6:31165634-31165971	GM12878	blood:	n/a	n/a
29	POLR2A	chr6:31163839-31166273	SK-N-MC	brain:	n/a	n/a
30	POLR2A	chr6:31164717-31166137	K562	blood:	n/a	n/a
31	POLR2A	chr6:31165178-31166011	HUVEC	blood vessel:	n/a	n/a
32	CTCF	chr6:31165840-31165990	BJ	skin:	n/a	n/a
33	POLR2A	chr6:31164585-31166226	GM12878	blood:	n/a	n/a
34	HEY1	chr6:31164693-31166174	HepG2	liver:	n/a	n/a
35	ZNF143	chr6:31165383-31166071	K562	blood:	n/a	chr6:31165447-31165457 chr6:31165803-31165822
36	POLR2A	chr6:31165387-31166111	GM12891	blood:	n/a	n/a
37	POLR2A	chr6:31164792-31166137	GM18526	blood:	n/a	n/a
38	TCF12	chr6:31165288-31166164	GM12878	blood:	n/a	chr6:31165743-31165752
39	MAZ	chr6:31165260-31166018	HepG2	liver:	n/a	chr6:31165518-31165528
40	MAX	chr6:31165387-31166154	GM12878	blood:	n/a	chr6:31165518-31165528
41	STAT3	chr6:31165312-31166070	MCF10A-Er-Src	breast:	n/a	chr6:31165520-31165532
42	POLR2A	chr6:31165320-31166151	NB4	blood:	n/a	n/a
43	FOSL2	chr6:31165708-31166218	A549	lung:	n/a	chr6:31166082-31166093 chr6:31166079-31166091 chr6:31166081-31166090
44	POLR2A	chr6:31164037-31166160	Raji	blood:	n/a	n/a
45	RCOR1	chr6:31165340-31166034	K562	blood:	n/a	n/a
46	TBL1XR1	chr6:31165826-31166088	K562	blood:	n/a	n/a
47	SIN3A	chr6:31165421-31166105	GM12878	blood:	n/a	chr6:31165845-31165858 chr6:31165447-31165456
48	TCF3	chr6:31165410-31166139	GM12878	blood:	n/a	n/a
49	POLR2A	chr6:31165274-31166071	HepG2	liver:	n/a	n/a
50	MAZ	chr6:31165353-31166076	Hela-S3	cervix:	n/a	chr6:31165518-31165528

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31165914-31165964	HEEpiC	esophagus:	n/a
2	chr6:31165914-31165964	HIPEpiC	eye:	n/a
3	chr6:31165914-31165964	BE2_C	brain:	n/a
4	chr6:31165922-31165972	U87	brain:	n/a
5	chr6:31165922-31165972	PFSK-1	brain:	n/a
6	chr6:31165922-31165972	LNCaP	prostate:	n/a
7	chr6:31165922-31165972	GM06990	blood:	n/a
8	chr6:31165914-31165964	PANC-1	pancreas:	n/a
9	chr6:31165914-31165964	AG10803	skin:	n/a
10	chr6:31165922-31165972	HRPEpiC	eye:	n/a
11	chr6:31165914-31165964	AG09319	gingival:	n/a
12	chr6:31165914-31165964	HNPCEpiC	eye:	n/a
13	chr6:31165914-31165964	SAEC	small airway:	n/a
14	chr6:31165922-31165972	HUVEC	blood vessel:	n/a
15	chr6:31165922-31165972	NT2-D1	testis:	n/a
16	chr6:31165914-31165964	HCPEpiC	choroid plexus:	n/a
17	chr6:31165922-31165972	HCT-116	colon:	n/a
18	chr6:31165922-31165972	HCF	heart:	n/a
19	chr6:31165914-31165964	PFSK-1	brain:	n/a
20	chr6:31165922-31165972	RPTEC	kidney:	n/a
21	chr6:31165922-31165972	ECC-1	luminal epithelium:	n/a
22	chr6:31165922-31165972	AG09319	gingival:	n/a
23	chr6:31165922-31165972	GM12891	blood:	n/a
24	chr6:31165914-31165964	SK-N-MC	brain:	n/a
25	chr6:31165914-31165964	HAEpiC	amniotic membrane:	n/a
26	chr6:31165914-31165964	T-47D	breast:	n/a
27	chr6:31165922-31165972	T-47D	breast:	n/a
28	chr6:31165922-31165972	HEK293	kidney:	embryo
29	chr6:31165914-31165964	CMK	blood:	n/a
30	chr6:31165914-31165964	GM12878	blood:	n/a
31	chr6:31165922-31165972	H1-hESC	embryonic stem cell:	embryo
32	chr6:31165922-31165972	GM12878	blood:	n/a
33	chr6:31165914-31165964	SKMC	muscle:	n/a
34	chr6:31165922-31165972	NHBE	bronchial:	n/a
35	chr6:31165914-31165964	HCM	heart:	n/a
36	chr6:31165914-31165964	Hela-S3	cervix:	n/a
37	chr6:31165914-31165964	HEK293	kidney:	embryo
38	chr6:31165922-31165972	BJ	skin:	n/a
39	chr6:31165922-31165972	AoSMC	blood vessel:	n/a
40	chr6:31165922-31165972	Hepatocyte	liver:	n/a
41	chr6:31165922-31165972	ovcar-3	ovarian:	n/a
42	chr6:31165914-31165964	SK-N-SH_RA	brain:	n/a
43	chr6:31165914-31165964	HepG2	liver:	n/a
44	chr6:31165922-31165972	Hela-S3	cervix:	n/a
45	chr6:31165922-31165972	GM19239	blood:	n/a
46	chr6:31165922-31165972	HCPEpiC	choroid plexus:	n/a
47	chr6:31165922-31165972	AG10803	skin:	n/a
48	chr6:31165914-31165964	A549	lung:	n/a
49	chr6:31165922-31165972	HAEpiC	amniotic membrane:	n/a
50	chr6:31165922-31165972	ProgFib	skin:	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:31163696..31166940-chr6:31333321..31336541,7	MCF-7	breast:
2	chr6:31164763..31166450-chr6:31463766..31465501,2	K562	blood:
3	chr6:31148110..31150151-chr6:31165829..31167375,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCF19-1	chr6:31165945-31165977	XLOC_005244

Variant related genes	Relation type
HCG27	TF binding region
ENSG00000272501	TF binding region
HCG27	CpG island
ENSG00000272501	CpG island
ENSG00000201680	Chromatin interaction
ENSG00000204531	Chromatin interaction
ENSG00000228432	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs3094606	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3094607	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3094608	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094609	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3094610	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3095237	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3095238	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3095246	0.92[EUR][1000 genomes]
rs3095252	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3130428	0.92[EUR][1000 genomes]
rs3130460	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3130461	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130466	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3130468	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3130512	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3130518	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3130520	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3130528	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3130532	0.94[EUR][1000 genomes]
rs3130941	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3130950	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3130952	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3131017	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3132499	0.94[EUR][1000 genomes]
rs3132500	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3132501	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3132503	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3132504	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3132507	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3132508	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3132509	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3132511	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3132517	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3132538	0.87[ASN][1000 genomes]
rs3132540	0.87[ASN][1000 genomes]
rs3134782	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134789	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4343960	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9264416	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
7	nsv427750	chr6:31028290-31234581	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
8	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
9	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
10	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
11	nsv1019637	chr6:31104401-31354706	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
12	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
13	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
14	nsv1034391	chr6:31131121-31279595	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
15	nsv1025909	chr6:31131121-31354706	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
16	nsv538175	chr6:31131121-31354706	Active TSS Bivalent Enhancer Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
17	nsv1015890	chr6:31131121-31449207	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
18	nsv538176	chr6:31131121-31449207	Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
19	esv32635	chr6:31141504-31250618	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
20	nsv1024887	chr6:31162849-31354706	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
21	nsv538177	chr6:31162849-31354706	Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
22	nsv1015903	chr6:31162849-31412740	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
23	nsv538178	chr6:31162849-31412740	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
24	nsv1031682	chr6:31162849-31449207	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
25	nsv538179	chr6:31162849-31449207	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3130463	CCHCR1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31164200-31167200	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr6:31164400-31166600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:31164400-31166800	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr6:31164400-31166800	Active TSS	Colon Smooth Muscle	Colon
5	chr6:31164400-31166800	Active TSS	A549	lung
6	chr6:31164400-31168400	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr6:31164600-31166000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:31164600-31166000	Active TSS	Cortex derived primary cultured neurospheres	brain
9	chr6:31164600-31166000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:31164600-31166200	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr6:31164600-31166200	Active TSS	Fetal Kidney	kidney
12	chr6:31164600-31166400	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:31164600-31166400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:31164600-31166400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:31164600-31166400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:31164600-31166400	Active TSS	Brain Angular Gyrus	brain
17	chr6:31164600-31166400	Active TSS	Brain Hippocampus Middle	brain
18	chr6:31164600-31166400	Active TSS	Right Ventricle	heart
19	chr6:31164600-31166400	Active TSS	HMEC	breast
20	chr6:31164600-31166600	Active TSS	Fetal Brain Female	brain
21	chr6:31164600-31166600	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr6:31164600-31166600	Active TSS	Left Ventricle	heart
23	chr6:31164600-31166600	Active TSS	Psoas Muscle	Psoas
24	chr6:31164600-31166600	Active TSS	HSMM	muscle
25	chr6:31164600-31166800	Active TSS	Right Atrium	heart
26	chr6:31164600-31166800	Active TSS	NHDF-Ad	bronchial
27	chr6:31164600-31166800	Active TSS	NHLF	lung
28	chr6:31164800-31166000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:31164800-31166000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:31164800-31166000	Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr6:31164800-31166000	Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr6:31164800-31166000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:31164800-31166000	Active TSS	Adipose Nuclei	Adipose
34	chr6:31164800-31166000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
35	chr6:31164800-31166000	Active TSS	Fetal Intestine Large	intestine
36	chr6:31164800-31166000	Flanking Active TSS	Placenta	Placenta
37	chr6:31164800-31166000	Active TSS	Placenta Amnion	Placenta Amnion
38	chr6:31164800-31166000	Active TSS	HSMMtube	muscle
39	chr6:31164800-31166000	Active TSS	NH-A	brain
40	chr6:31164800-31166000	Active TSS	NHEK	skin
41	chr6:31164800-31166000	Active TSS	Osteobl	bone
42	chr6:31164800-31166200	Active TSS	H1 Cell Line	embryonic stem cell
43	chr6:31164800-31166200	Active TSS	H9 Cell Line	embryonic stem cell
44	chr6:31164800-31166200	Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr6:31164800-31166200	Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr6:31164800-31166200	Active TSS	Fetal Intestine Small	intestine
47	chr6:31164800-31166200	Active TSS	Fetal Thymus	thymus
48	chr6:31164800-31166400	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr6:31164800-31166400	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr6:31164800-31166400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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