Variant report

Variant	rs3131556
Chromosome Location	chr1:186446327-186446328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10494583	1.00[JPT][hapmap]
rs10494584	1.00[JPT][hapmap]
rs10911902	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs12120448	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12131484	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12133471	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12137128	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16825150	1.00[JPT][hapmap]
rs16825185	1.00[JPT][hapmap]
rs16825243	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2272412	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2297226	1.00[JPT][hapmap]
rs3119331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3131554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736597	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3753565	1.00[JPT][hapmap]
rs3766702	1.00[JPT][hapmap]
rs3766703	1.00[JPT][hapmap]
rs3766704	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3766707	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3820181	1.00[JPT][hapmap]
rs3820182	1.00[JPT][hapmap]
rs55658718	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55660734	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61810323	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425028	1.00[JPT][hapmap]
rs6658482	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6664763	1.00[JPT][hapmap]
rs6666680	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6678193	0.80[ASN][1000 genomes]
rs6689129	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7514615	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7515126	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7525634	0.80[ASN][1000 genomes]
rs7556543	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1012164	chr1:186323867-186565995	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv2762201	chr1:186323879-186566007	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186406600-186450000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:186443000-186447800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:186444600-186447400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:186445200-186446400	Enhancers	NH-A	brain
5	chr1:186445600-186446400	Flanking Active TSS	HUVEC	blood vessel
6	chr1:186446200-186450400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:186446200-186450600	Weak transcription	Osteobl	bone

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