Variant report

Variant	rs3133928
Chromosome Location	chr8:110691429-110691430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10505132	0.83[JPT][hapmap]
rs13268243	0.82[JPT][hapmap]
rs3108837	0.83[JPT][hapmap]
rs3108840	0.83[JPT][hapmap]
rs3108844	0.82[EUR][1000 genomes]
rs3108851	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3133922	0.81[ASN][1000 genomes]
rs3133929	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3133935	0.83[JPT][hapmap]
rs3133936	0.83[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3133928	PKHD1L1	cis	lymphoblastoid	seeQTL
rs3133928	KCNV1	cis	lymphoblastoid	seeQTL
rs3133928	PKHD1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110679800-110695000	Weak transcription	Fetal Intestine Small	intestine
2	chr8:110691000-110692600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:110691200-110693400	Active TSS	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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