Variant report

Variant	rs3134036
Chromosome Location	chr8:119821860-119821861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10955900	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12545372	0.80[ASN][1000 genomes]
rs13267346	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1874031	0.88[EUR][1000 genomes]
rs3103986	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3134034	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36166185	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3134036	TNFRSF11B	cis	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119816600-119823800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:119819800-119822000	Enhancers	NHLF	lung
3	chr8:119819800-119823000	Enhancers	Osteobl	bone
4	chr8:119820000-119825200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:119820400-119823200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:119821000-119823600	Weak transcription	NHDF-Ad	bronchial
7	chr8:119821200-119822000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:119821800-119822200	Enhancers	GM12878-XiMat	blood
9	chr8:119821800-119823800	Weak transcription	Hela-S3	cervix
10	chr8:119821800-119824200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:119821800-119824200	Weak transcription	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links