Variant report

Variant	rs3134704
Chromosome Location	chr6:55072273-55072274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11751491	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs13198993	0.85[CEU][hapmap]
rs3122154	0.89[CEU][hapmap]
rs3122155	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3122163	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3122170	0.86[EUR][1000 genomes]
rs3134698	0.87[EUR][1000 genomes]
rs3134705	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3134706	0.85[ASN][1000 genomes]
rs3134707	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4609033	0.84[CEU][hapmap]
rs66476116	0.83[EUR][1000 genomes]
rs6929450	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs7768760	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs9370399	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs9464203	0.83[EUR][1000 genomes]
rs9475195	0.81[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55063800-55076600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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