Variant report

Variant	rs3134899
Chromosome Location	chr6:31473286-31473287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31473264-31473314	AoSMC	blood vessel:	n/a
2	chr6:31473264-31473314	CMK	blood:	n/a
3	chr6:31473264-31473314	MCF10A-Er-Src	breast:	n/a
4	chr6:31473264-31473314	HRE	kidney:	n/a
5	chr6:31473264-31473314	NHBE	bronchial:	n/a
6	chr6:31473264-31473314	SK-N-MC	brain:	n/a
7	chr6:31473264-31473314	HCT-116	colon:	n/a
8	chr6:31473264-31473314	BE2_C	brain:	n/a
9	chr6:31473264-31473314	HRPEpiC	eye:	n/a
10	chr6:31473264-31473314	K562	blood:	n/a
11	chr6:31473264-31473314	HRCEpiC	kidney:	n/a
12	chr6:31473264-31473314	HAEpiC	amniotic membrane:	n/a
13	chr6:31473264-31473314	U87	brain:	n/a
14	chr6:31473264-31473314	ovcar-3	ovarian:	n/a
15	chr6:31473264-31473314	NH-A	brain:	n/a
16	chr6:31473264-31473314	NHDF-neo	bronchial:	n/a
17	chr6:31473264-31473314	HUVEC	blood vessel:	n/a
18	chr6:31473264-31473314	MCF-7	breast:	n/a
19	chr6:31473264-31473314	A549	lung:	n/a
20	chr6:31473264-31473314	PrEC	prostate:	n/a
21	chr6:31473264-31473314	HL-60	blood:	n/a
22	chr6:31473264-31473314	ECC-1	luminal epithelium:	n/a
23	chr6:31473264-31473314	HEK293	kidney:	embryo
24	chr6:31473264-31473314	HNPCEpiC	eye:	n/a
25	chr6:31473264-31473314	GM19239	blood:	n/a
26	chr6:31473264-31473314	IMR90	lung:	fetal
27	chr6:31473264-31473314	GM12878	blood:	n/a
28	chr6:31473264-31473314	T-47D	breast:	n/a
29	chr6:31473264-31473314	GM06990	blood:	n/a
30	chr6:31473264-31473314	Jurkat	blood:	n/a
31	chr6:31473264-31473314	SK-N-SH_RA	brain:	n/a
32	chr6:31473264-31473314	NB4	blood:	n/a
33	chr6:31473264-31473314	HEEpiC	esophagus:	n/a
34	chr6:31473264-31473314	RPTEC	kidney:	n/a
35	chr6:31473264-31473314	Caco-2	colon:	n/a
36	chr6:31473264-31473314	HCF	heart:	n/a
37	chr6:31473264-31473314	HPAEpiC	pulmonary alveolar:	n/a
38	chr6:31473264-31473314	PANC-1	pancreas:	n/a
39	chr6:31473264-31473314	Hepatocyte	liver:	n/a
40	chr6:31473264-31473314	LNCaP	prostate:	n/a
41	chr6:31473264-31473314	SKMC	muscle:	n/a
42	chr6:31473264-31473314	AG04449	skin:	fetal
43	chr6:31473264-31473314	GM12891	blood:	n/a
44	chr6:31473264-31473314	AG09309	skin:	n/a
45	chr6:31473264-31473314	HIPEpiC	eye:	n/a
46	chr6:31473264-31473314	BJ	skin:	n/a
47	chr6:31473264-31473314	NT2-D1	testis:	n/a
48	chr6:31473264-31473314	GM12892	blood:	n/a
49	chr6:31473264-31473314	H1-hESC	embryonic stem cell:	embryo
50	chr6:31473264-31473314	SAEC	small airway:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:31471170..31473620-chr6:31507634..31510335,2	K562	blood:

No data

Variant related genes	Relation type
MICB	CpG island
ENSG00000198563	Chromatin interaction
ENSG00000234006	Chromatin interaction
ENSG00000265236	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs2286713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2855805	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28729827	0.81[AFR][1000 genomes]
rs3093952	0.83[AFR][1000 genomes]
rs3093953	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3093954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3093955	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3094001	0.91[ASN][1000 genomes]
rs3094002	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3094003	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3095230	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3095231	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3095232	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3095234	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3130615	0.83[AFR][1000 genomes]
rs3130925	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3130927	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3131633	0.82[ASN][1000 genomes]
rs3131634	0.83[AFR][1000 genomes]
rs3131635	0.83[AFR][1000 genomes]
rs3131636	0.83[AFR][1000 genomes]
rs3131638	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3132458	0.93[ASN][1000 genomes]
rs3132461	0.93[ASN][1000 genomes]
rs3132463	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3132464	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3132465	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3132468	0.83[AFR][1000 genomes]
rs3134891	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3134892	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3134893	0.83[AFR][1000 genomes]
rs3134894	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3134895	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3134897	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:50 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
2	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
3	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
4	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
5	esv3381377	chr6:31192213-31498578	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
6	esv3340592	chr6:31192248-31498535	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
7	nsv1021052	chr6:31206639-31485736	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
8	nsv1022451	chr6:31279535-31485736	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
9	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
10	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
11	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
12	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
13	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
14	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
15	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
16	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
17	nsv1018463	chr6:31337336-31525275	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases
18	nsv538189	chr6:31337336-31525275	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases
19	nsv432868	chr6:31338844-31721033	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	250 gene(s)	inside rSNPs	diseases
20	esv2752115	chr6:31352880-31498721	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
21	esv1831710	chr6:31352945-31477763	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
22	esv2752118	chr6:31353329-31481321	Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
23	esv2757162	chr6:31353329-31542308	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
24	esv1832352	chr6:31355100-31477763	Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
25	esv34684	chr6:31359621-31474688	Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
26	esv2752119	chr6:31359621-31498521	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
27	nsv1020595	chr6:31360095-31474688	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
28	nsv1022499	chr6:31360095-31485174	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
29	nsv1026211	chr6:31362310-31474688	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
30	nsv1018716	chr6:31362310-31481299	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
31	esv3362717	chr6:31377565-31479170	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
32	nsv432874	chr6:31379821-31498521	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
33	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
34	nsv432877	chr6:31412961-31528690	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
35	nsv1018960	chr6:31446366-31481299	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
36	nsv1015886	chr6:31448533-31480272	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
37	nsv1025961	chr6:31448533-31497835	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
38	nsv1021578	chr6:31448533-31498737	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
39	nsv10821	chr6:31453261-31476482	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
40	nsv601937	chr6:31457178-31475486	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
41	esv1825236	chr6:31458277-31476322	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
42	nsv884413	chr6:31458633-31479788	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
43	nsv884414	chr6:31458633-31498497	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
44	nsv884415	chr6:31458633-31501413	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
45	esv1833550	chr6:31460220-31474688	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
46	nsv462869	chr6:31463963-31481105	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
47	nsv601940	chr6:31463963-31481105	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
48	esv1803505	chr6:31465030-31474688	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
49	esv1818650	chr6:31465030-31474688	Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
50	esv1839708	chr6:31465030-31474688	Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs3134899	HLA-B	cis	Whole Blood	GTEx
rs3134899	HLA-C	cis	Whole Blood	GTEx
rs3134899	XXbac-BPG248L24.12	cis	Artery Tibial	GTEx
rs3134899	XXbac-BPG248L24.12	cis	Muscle Skeletal	GTEx
rs3134899	XXbac-BPG248L24.12	cis	Whole Blood	GTEx
rs3134899	XXbac-BPG248L24.12	cis	Esophagus Mucosa	GTEx
rs3134899	HLA-C	cis	lymphoblastoid	GTEx
rs3134899	HIST1H1B	cis	cerebellum	SCAN
rs3134899	XXbac-BPG248L24.12	cis	lung	GTEx
rs3134899	XXbac-BPG248L24.12	cis	Thyroid	GTEx
rs3134899	ANKS1A	cis	cerebellum	SCAN

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31466400-31473400	Weak transcription	Aorta	Aorta
2	chr6:31466800-31473400	Weak transcription	Primary T cells from cord blood	blood
3	chr6:31466800-31473400	Weak transcription	Thymus	Thymus
4	chr6:31466800-31474200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:31466800-31477400	Weak transcription	A549	lung
6	chr6:31466800-31481200	Weak transcription	NHDF-Ad	bronchial
7	chr6:31467000-31473400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:31467000-31473600	Weak transcription	Pancreas	Pancrea
9	chr6:31467000-31473800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:31467000-31474200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:31467000-31474200	Weak transcription	Osteobl	bone
12	chr6:31467000-31480600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:31467200-31473400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:31467200-31473600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:31467200-31474000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:31467200-31474000	Weak transcription	Hela-S3	cervix
17	chr6:31467200-31474200	Weak transcription	Esophagus	oesophagus
18	chr6:31467200-31477600	Weak transcription	NH-A	brain
19	chr6:31467200-31481200	Weak transcription	Liver	Liver
20	chr6:31467400-31473400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:31467400-31473400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr6:31467400-31473400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:31467400-31473400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:31467400-31473400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:31467400-31473400	Weak transcription	Fetal Thymus	thymus
26	chr6:31467400-31473600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:31467400-31473600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:31467400-31473800	Weak transcription	Lung	lung
29	chr6:31467400-31474000	Weak transcription	NHEK	skin
30	chr6:31467400-31474200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:31467400-31474200	Weak transcription	NHLF	lung
32	chr6:31467400-31506600	Weak transcription	Right Atrium	heart
33	chr6:31467600-31473400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:31467600-31474200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:31467600-31475400	Weak transcription	Right Ventricle	heart
36	chr6:31467600-31477600	Weak transcription	HMEC	breast
37	chr6:31467600-31481000	Weak transcription	HSMM	muscle
38	chr6:31467600-31481400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:31468600-31473600	Weak transcription	K562	blood
40	chr6:31468600-31481600	Weak transcription	Left Ventricle	heart
41	chr6:31468800-31473600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:31468800-31473600	Weak transcription	HUVEC	blood vessel
43	chr6:31468800-31474000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:31468800-31474200	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:31469000-31474000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:31469200-31474600	Weak transcription	HepG2	liver
47	chr6:31469600-31473400	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:31470800-31474200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr6:31471000-31474200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:31471200-31474200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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