Variant report

Variant	rs313744
Chromosome Location	chr1:86275985-86275986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:86262773..86264767-chr1:86274959..86276756,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10873731	0.87[ASN][1000 genomes]
rs11161693	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11161695	0.89[ASN][1000 genomes]
rs12029238	0.89[ASN][1000 genomes]
rs12124109	0.89[ASN][1000 genomes]
rs12127479	0.89[ASN][1000 genomes]
rs167518	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs172693	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs172694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17411495	0.89[ASN][1000 genomes]
rs188763	0.87[ASN][1000 genomes]
rs1904947	0.89[ASN][1000 genomes]
rs2256515	0.89[ASN][1000 genomes]
rs2795038	0.89[ASN][1000 genomes]
rs313701	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs313702	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs313705	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs313707	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs313709	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs313738	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs313739	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs313740	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs313741	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs313742	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs313743	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs313745	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs313746	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs313749	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs313754	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs313755	0.81[AMR][1000 genomes]
rs313756	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs313757	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs313760	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs313761	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs313762	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs313764	0.89[ASN][1000 genomes]
rs313765	0.82[ASN][1000 genomes]
rs313766	0.89[ASN][1000 genomes]
rs313767	0.85[ASN][1000 genomes]
rs313768	0.89[ASN][1000 genomes]
rs313769	0.89[ASN][1000 genomes]
rs313770	0.89[ASN][1000 genomes]
rs313771	0.81[ASN][1000 genomes]
rs313772	0.82[ASN][1000 genomes]
rs313774	0.87[ASN][1000 genomes]
rs313775	0.89[ASN][1000 genomes]
rs383588	0.92[ASN][1000 genomes]
rs428475	0.89[ASN][1000 genomes]
rs437257	0.89[ASN][1000 genomes]
rs445782	0.89[ASN][1000 genomes]
rs556247	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs61785081	0.89[ASN][1000 genomes]
rs61785083	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7524286	0.89[ASN][1000 genomes]
rs7536101	0.89[ASN][1000 genomes]
rs7544141	0.89[ASN][1000 genomes]
rs7549218	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv3391173	chr1:86005637-86337469	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv817212	chr1:86127851-86658426	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv546721	chr1:86226352-86392577	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv999743	chr1:86241246-86364846	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1011293	chr1:86270649-86416972	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86273400-86276000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
2	chr1:86274000-86276400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr1:86274000-86276400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:86274000-86277000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:86275200-86282000	Weak transcription	Fetal Lung	lung

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