Variant report

Variant	rs313882
Chromosome Location	chr4:125549362-125549363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs313884	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9307543	0.84[AFR][1000 genomes]
rs9307544	0.84[AFR][1000 genomes]
rs9999425	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125523800-125552800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:125524800-125553000	Weak transcription	HSMMtube	muscle
3	chr4:125536600-125552600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:125539000-125561200	Weak transcription	Ovary	ovary
5	chr4:125539200-125572400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:125539400-125552200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:125540000-125590200	Weak transcription	Aorta	Aorta
8	chr4:125543600-125584200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:125544600-125553200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:125544800-125553000	Weak transcription	Fetal Stomach	stomach
11	chr4:125544800-125553200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:125545000-125572400	Weak transcription	Left Ventricle	heart
13	chr4:125545200-125552800	Weak transcription	HSMM	muscle
14	chr4:125547000-125571400	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:125548200-125553000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:125548400-125553200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:125549000-125552000	Weak transcription	HUVEC	blood vessel
18	chr4:125549000-125552800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:125549200-125552600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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