Variant report

Variant	rs9307544
Chromosome Location	chr4:125558724-125558725
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:125558316..125561381-chr4:125632782..125635939,3	MCF-7	breast:
2	chr4:125556864..125559045-chr4:125577964..125580279,2	K562	blood:
3	chr4:125556505..125558732-chr4:125559771..125561387,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10006577	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10006893	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10013174	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10018651	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10028864	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1015968	0.87[ASN][1000 genomes]
rs1016382	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1016383	0.87[ASN][1000 genomes]
rs10518442	0.85[ASN][1000 genomes]
rs12331436	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13104292	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13107141	0.86[ASN][1000 genomes]
rs13110120	0.85[ASN][1000 genomes]
rs13110982	0.85[ASN][1000 genomes]
rs13117832	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13130626	0.85[ASN][1000 genomes]
rs13144437	0.85[ASN][1000 genomes]
rs13150707	0.81[ASN][1000 genomes]
rs1472290	0.87[ASN][1000 genomes]
rs1495126	0.87[ASN][1000 genomes]
rs1495127	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1498024	0.87[ASN][1000 genomes]
rs17008475	0.85[ASN][1000 genomes]
rs17008478	0.85[ASN][1000 genomes]
rs1874748	0.87[ASN][1000 genomes]
rs1995135	0.87[ASN][1000 genomes]
rs2036204	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220738	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2242378	0.85[ASN][1000 genomes]
rs28399027	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs313882	0.84[AFR][1000 genomes]
rs313884	0.92[AFR][1000 genomes]
rs3172524	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34348208	0.85[ASN][1000 genomes]
rs34748024	0.87[ASN][1000 genomes]
rs34877613	0.85[ASN][1000 genomes]
rs35053443	0.87[ASN][1000 genomes]
rs35180555	0.87[ASN][1000 genomes]
rs35282937	0.87[ASN][1000 genomes]
rs35333384	0.85[ASN][1000 genomes]
rs35463553	0.87[ASN][1000 genomes]
rs35958270	0.85[ASN][1000 genomes]
rs36177260	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733471	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4833999	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4834000	0.85[ASN][1000 genomes]
rs56902532	0.87[ASN][1000 genomes]
rs59841071	0.87[ASN][1000 genomes]
rs6534448	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815682	0.81[ASN][1000 genomes]
rs6816263	0.82[ASN][1000 genomes]
rs6849375	0.81[ASN][1000 genomes]
rs6849813	0.85[ASN][1000 genomes]
rs9307543	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999425	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125539000-125561200	Weak transcription	Ovary	ovary
2	chr4:125539200-125572400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:125540000-125590200	Weak transcription	Aorta	Aorta
4	chr4:125543600-125584200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:125545000-125572400	Weak transcription	Left Ventricle	heart
6	chr4:125547000-125571400	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:125552400-125558800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:125553200-125560200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:125553400-125561000	Weak transcription	NHLF	lung
10	chr4:125553400-125563000	Weak transcription	HSMM	muscle
11	chr4:125553400-125566000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:125553400-125590200	Weak transcription	HSMMtube	muscle
13	chr4:125553600-125561000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr4:125553600-125561200	Weak transcription	NH-A	brain
15	chr4:125553600-125561200	Weak transcription	Osteobl	bone
16	chr4:125553600-125564000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:125553600-125587600	Weak transcription	Adipose Nuclei	Adipose
18	chr4:125553800-125565800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:125554000-125565800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr4:125554000-125572000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:125554000-125591600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr4:125554600-125558800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr4:125554800-125591200	Weak transcription	Fetal Kidney	kidney
24	chr4:125555200-125560800	Weak transcription	Hela-S3	cervix
25	chr4:125555200-125561400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:125555200-125563200	Weak transcription	Fetal Lung	lung
27	chr4:125555400-125560800	Weak transcription	NHEK	skin
28	chr4:125555400-125563800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:125555400-125586800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:125555800-125559400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr4:125556000-125559000	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr4:125556800-125591200	Weak transcription	Esophagus	oesophagus
33	chr4:125557800-125558800	Strong transcription	HUVEC	blood vessel
34	chr4:125558200-125560200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:125558200-125560200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:125558200-125561000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:125558200-125565800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr4:125558400-125558800	Enhancers	H1 Cell Line	embryonic stem cell
39	chr4:125558400-125561000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr4:125558600-125559800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:125558600-125560000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr4:125558600-125563000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr4:125558600-125563200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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