Variant report

Variant	rs1472290
Chromosome Location	chr4:125563052-125563053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125555130..125557311-chr4:125561762..125564505,2	K562	blood:
2	chr4:125561432..125563485-chr4:125563743..125567652,3	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10006577	0.87[ASN][1000 genomes]
rs10006893	0.87[ASN][1000 genomes]
rs10013174	0.84[ASN][1000 genomes]
rs10018651	0.87[ASN][1000 genomes]
rs10028864	0.85[ASN][1000 genomes]
rs1015968	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1016382	0.87[ASN][1000 genomes]
rs1016383	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518442	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12331436	0.85[ASN][1000 genomes]
rs13104292	0.83[ASN][1000 genomes]
rs13107141	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13110120	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13110982	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13117832	0.87[ASN][1000 genomes]
rs13130626	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13144437	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13150707	0.93[ASN][1000 genomes]
rs1495126	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495127	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1498024	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008475	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17008478	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1874748	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995135	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036204	0.85[ASN][1000 genomes]
rs220738	0.87[ASN][1000 genomes]
rs2242378	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28399027	0.85[ASN][1000 genomes]
rs3172524	0.87[ASN][1000 genomes]
rs34348208	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34748024	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34877613	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35053443	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35180555	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35282937	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35333384	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35463553	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35958270	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36177260	0.87[ASN][1000 genomes]
rs3733471	0.87[ASN][1000 genomes]
rs4833999	0.85[ASN][1000 genomes]
rs4834000	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56902532	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59841071	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534448	0.87[ASN][1000 genomes]
rs6815682	0.93[ASN][1000 genomes]
rs6816263	0.95[ASN][1000 genomes]
rs6849375	0.93[ASN][1000 genomes]
rs6849813	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9307543	0.87[ASN][1000 genomes]
rs9307544	0.87[ASN][1000 genomes]
rs9999425	0.86[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125539200-125572400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:125540000-125590200	Weak transcription	Aorta	Aorta
3	chr4:125543600-125584200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:125545000-125572400	Weak transcription	Left Ventricle	heart
5	chr4:125547000-125571400	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:125553400-125566000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:125553400-125590200	Weak transcription	HSMMtube	muscle
8	chr4:125553600-125564000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:125553600-125587600	Weak transcription	Adipose Nuclei	Adipose
10	chr4:125553800-125565800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:125554000-125565800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:125554000-125572000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:125554000-125591600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:125554800-125591200	Weak transcription	Fetal Kidney	kidney
15	chr4:125555200-125563200	Weak transcription	Fetal Lung	lung
16	chr4:125555400-125563800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:125555400-125586800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:125556800-125591200	Weak transcription	Esophagus	oesophagus
19	chr4:125558200-125565800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:125558600-125563200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:125558800-125563400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr4:125559400-125563200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr4:125560200-125586600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:125560800-125564000	Enhancers	NHEK	skin
25	chr4:125561200-125564800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:125561400-125563200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:125561400-125590200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr4:125562200-125591400	Weak transcription	NHLF	lung
29	chr4:125562400-125563800	Enhancers	NH-A	brain
30	chr4:125562400-125564800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:125562400-125565000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:125562600-125563200	Flanking Active TSS	A549	lung
33	chr4:125562600-125563800	Enhancers	Hela-S3	cervix
34	chr4:125562600-125565000	Enhancers	HMEC	breast
35	chr4:125562800-125563600	Flanking Active TSS	HUVEC	blood vessel
36	chr4:125562800-125563600	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr4:125562800-125563600	Enhancers	NHDF-Ad	bronchial
38	chr4:125562800-125564200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr4:125562800-125564800	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr4:125563000-125563200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:125563000-125563400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr4:125563000-125563600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr4:125563000-125563600	Enhancers	HSMM	muscle
44	chr4:125563000-125563600	Enhancers	Osteobl	bone
45	chr4:125563000-125564200	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr4:125563000-125564400	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr4:125563000-125564600	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr4:125563000-125564600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:125563000-125564800	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links