Variant report

Variant	rs10028864
Chromosome Location	chr4:125616351-125616352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125615666..125618502-chr4:125622718..125626356,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10006577	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10006893	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10013174	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10018651	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1015968	0.85[ASN][1000 genomes]
rs1016382	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1016383	0.85[ASN][1000 genomes]
rs10518442	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12331436	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13104292	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13107141	0.84[ASN][1000 genomes]
rs13110120	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13110982	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13117832	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13130626	0.87[ASN][1000 genomes]
rs13144437	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1472290	0.85[ASN][1000 genomes]
rs1495126	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1495127	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1498024	0.85[ASN][1000 genomes]
rs17008475	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17008478	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1874748	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1995135	0.85[ASN][1000 genomes]
rs2036204	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220738	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2242378	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28399027	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3172524	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34348208	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34748024	0.85[ASN][1000 genomes]
rs34877613	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35053443	0.85[ASN][1000 genomes]
rs35180555	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35282937	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35333384	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35463553	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35958270	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs36177260	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3733471	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4833999	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834000	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56902532	0.85[ASN][1000 genomes]
rs59841071	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6534448	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6816263	0.84[ASN][1000 genomes]
rs6849813	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9307543	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9307544	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9999425	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125593000-125618200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:125593000-125621800	Weak transcription	Fetal Stomach	stomach
3	chr4:125593000-125631200	Weak transcription	Esophagus	oesophagus
4	chr4:125593400-125621800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:125593400-125629800	Weak transcription	Aorta	Aorta
6	chr4:125593400-125629800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:125593400-125631200	Weak transcription	Thymus	Thymus
8	chr4:125593600-125617400	Weak transcription	Fetal Intestine Large	intestine
9	chr4:125593600-125629600	Weak transcription	HSMMtube	muscle
10	chr4:125593600-125631000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:125594200-125625400	Weak transcription	Hela-S3	cervix
12	chr4:125594200-125631200	Weak transcription	Fetal Thymus	thymus
13	chr4:125594600-125616600	Weak transcription	A549	lung
14	chr4:125597400-125631200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr4:125599200-125627800	Weak transcription	Placenta	Placenta
16	chr4:125600000-125618000	Weak transcription	NHDF-Ad	bronchial
17	chr4:125600000-125618200	Weak transcription	Dnd41	blood
18	chr4:125600000-125618600	Weak transcription	Fetal Brain Female	brain
19	chr4:125600200-125616600	Weak transcription	Adipose Nuclei	Adipose
20	chr4:125601200-125617000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:125601600-125621200	Weak transcription	Fetal Heart	heart
22	chr4:125606000-125624400	Weak transcription	Fetal Brain Male	brain
23	chr4:125606000-125631000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr4:125606200-125629600	Weak transcription	K562	blood
25	chr4:125606400-125621800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:125607800-125621200	Weak transcription	NH-A	brain
27	chr4:125607800-125631200	Weak transcription	Left Ventricle	heart
28	chr4:125608000-125616400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr4:125608000-125618600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:125608000-125621200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr4:125608200-125618200	Weak transcription	HMEC	breast
32	chr4:125608200-125621800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:125608200-125629800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr4:125608400-125618600	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr4:125608400-125621400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr4:125608800-125617600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr4:125609400-125616400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr4:125609600-125618600	Weak transcription	Brain Germinal Matrix	brain
39	chr4:125609800-125617400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr4:125610600-125621200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr4:125610800-125616400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr4:125611000-125616400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:125611000-125618400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr4:125611000-125618800	Weak transcription	Osteobl	bone
45	chr4:125611400-125629800	Weak transcription	Fetal Kidney	kidney
46	chr4:125611600-125632400	Weak transcription	Stomach Mucosa	stomach
47	chr4:125612400-125618800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr4:125613200-125618200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr4:125613400-125618600	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr4:125614000-125616400	Weak transcription	Fetal Muscle Leg	muscle

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