Variant report

Variant	rs10018651
Chromosome Location	chr4:125592065-125592066
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:125590937..125593112-chr4:125594242..125596673,2	K562	blood:
2	chr4:125590810..125593720-chr4:125595173..125598138,3	K562	blood:
3	chr4:125591423..125593951-chr4:125596939..125598532,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10006577	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10006893	0.94[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10013174	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10028864	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1015968	0.87[ASN][1000 genomes]
rs1016382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1016383	0.87[ASN][1000 genomes]
rs10518442	0.85[ASN][1000 genomes]
rs12331436	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13104292	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13107141	0.86[ASN][1000 genomes]
rs13110120	0.86[CHB][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13110982	0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[ASN][1000 genomes]
rs13117832	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13130626	0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[ASN][1000 genomes]
rs13144437	0.85[ASN][1000 genomes]
rs13150707	0.81[ASN][1000 genomes]
rs1472290	0.87[ASN][1000 genomes]
rs1495126	0.87[ASN][1000 genomes]
rs1495127	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1498024	0.87[ASN][1000 genomes]
rs17008475	0.85[ASN][1000 genomes]
rs17008478	0.85[ASN][1000 genomes]
rs1874748	0.87[ASN][1000 genomes]
rs1995135	0.87[ASN][1000 genomes]
rs2036204	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.86[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220738	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2242378	0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[ASN][1000 genomes]
rs28399027	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs313884	0.83[AFR][1000 genomes]
rs3172524	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34348208	0.85[ASN][1000 genomes]
rs34748024	0.87[ASN][1000 genomes]
rs34877613	0.85[ASN][1000 genomes]
rs35053443	0.87[ASN][1000 genomes]
rs35180555	0.87[ASN][1000 genomes]
rs35282937	0.87[ASN][1000 genomes]
rs35333384	0.85[ASN][1000 genomes]
rs35463553	0.87[ASN][1000 genomes]
rs35958270	0.85[ASN][1000 genomes]
rs36177260	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733471	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4833999	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4834000	0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[ASN][1000 genomes]
rs56902532	0.87[ASN][1000 genomes]
rs59841071	0.87[ASN][1000 genomes]
rs6534448	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815682	0.81[ASN][1000 genomes]
rs6816263	0.82[ASN][1000 genomes]
rs6849375	0.81[ASN][1000 genomes]
rs6849813	0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[ASN][1000 genomes]
rs9307543	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307544	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999425	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980475	chr4:125590327-125593712	ZNF genes & repeats Strong transcription Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125583400-125595000	Strong transcription	HUVEC	blood vessel
2	chr4:125584400-125593600	Strong transcription	NHDF-Ad	bronchial
3	chr4:125586600-125593800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:125586800-125594400	Strong transcription	HSMM	muscle
5	chr4:125587000-125593800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:125587000-125595000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:125587000-125597200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:125587000-125601000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:125587200-125594000	Strong transcription	Muscle Satellite Cultured Cells	--
10	chr4:125587200-125594800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr4:125587200-125594800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr4:125587400-125594800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:125587800-125593800	Strong transcription	Osteobl	bone
14	chr4:125587800-125595200	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:125588000-125595000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:125589000-125595200	Strong transcription	Placenta	Placenta
17	chr4:125589600-125593600	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr4:125589600-125594600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:125589800-125593400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:125589800-125593400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:125589800-125593600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:125589800-125593600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:125589800-125593600	Strong transcription	Fetal Intestine Large	intestine
24	chr4:125589800-125593600	Strong transcription	Fetal Muscle Trunk	muscle
25	chr4:125589800-125593600	Strong transcription	Fetal Muscle Leg	muscle
26	chr4:125589800-125593800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:125589800-125593800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:125589800-125594000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:125589800-125595000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:125589800-125595000	Strong transcription	NH-A	brain
31	chr4:125590000-125592200	Strong transcription	Fetal Lung	lung
32	chr4:125590000-125593400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr4:125590000-125593400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr4:125590000-125593600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:125590000-125593600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:125590000-125593600	Strong transcription	Liver	Liver
37	chr4:125590000-125593600	Strong transcription	Stomach Smooth Muscle	stomach
38	chr4:125590000-125593600	Strong transcription	NHEK	skin
39	chr4:125590000-125593800	Strong transcription	Primary T cells from cord blood	blood
40	chr4:125590000-125593800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr4:125590000-125594000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:125590000-125594800	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr4:125590200-125592200	Strong transcription	Lung	lung
44	chr4:125590200-125592800	Strong transcription	Fetal Heart	heart
45	chr4:125590200-125593000	Strong transcription	Fetal Stomach	stomach
46	chr4:125590200-125593200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr4:125590200-125593200	Strong transcription	Brain Germinal Matrix	brain
48	chr4:125590200-125593400	Strong transcription	Primary hematopoietic stem cells	blood
49	chr4:125590200-125593400	Strong transcription	Fetal Brain Female	brain
50	chr4:125590200-125593400	Strong transcription	Sigmoid Colon	Sigmoid Colon

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