Variant report

Variant	rs28399027
Chromosome Location	chr4:125606798-125606799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10006577	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10006893	0.94[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.85[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10013174	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10018651	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10028864	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1015968	0.85[ASN][1000 genomes]
rs1016382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1016383	0.85[ASN][1000 genomes]
rs10518442	0.87[ASN][1000 genomes]
rs12331436	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13104292	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13107141	0.84[ASN][1000 genomes]
rs13110120	0.86[CHB][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];0.87[ASN][1000 genomes]
rs13110982	0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[MEX][hapmap];0.87[ASN][1000 genomes]
rs13117832	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13130626	0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[MEX][hapmap];0.87[ASN][1000 genomes]
rs13144437	0.87[ASN][1000 genomes]
rs1472290	0.85[ASN][1000 genomes]
rs1495126	0.85[ASN][1000 genomes]
rs1495127	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1498024	0.85[ASN][1000 genomes]
rs17008475	0.87[ASN][1000 genomes]
rs17008478	0.87[ASN][1000 genomes]
rs1874748	0.85[ASN][1000 genomes]
rs1995135	0.85[ASN][1000 genomes]
rs2036204	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220738	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2242378	0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[MEX][hapmap];0.87[ASN][1000 genomes]
rs3172524	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34348208	0.87[ASN][1000 genomes]
rs34748024	0.85[ASN][1000 genomes]
rs34877613	0.87[ASN][1000 genomes]
rs35053443	0.85[ASN][1000 genomes]
rs35180555	0.85[ASN][1000 genomes]
rs35282937	0.85[ASN][1000 genomes]
rs35333384	0.87[ASN][1000 genomes]
rs35463553	0.85[ASN][1000 genomes]
rs35958270	0.87[ASN][1000 genomes]
rs36177260	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3733471	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4833999	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834000	0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[MEX][hapmap];0.87[ASN][1000 genomes]
rs56902532	0.85[ASN][1000 genomes]
rs59841071	0.85[ASN][1000 genomes]
rs6534448	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6816263	0.84[ASN][1000 genomes]
rs6849813	0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[MEX][hapmap];0.87[ASN][1000 genomes]
rs9307543	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9307544	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9999425	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125592400-125611400	Weak transcription	HepG2	liver
2	chr4:125593000-125608400	Weak transcription	Pancreas	Pancrea
3	chr4:125593000-125618200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:125593000-125621800	Weak transcription	Fetal Stomach	stomach
5	chr4:125593000-125631200	Weak transcription	Esophagus	oesophagus
6	chr4:125593200-125607400	Weak transcription	Gastric	stomach
7	chr4:125593200-125607800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:125593200-125608800	Weak transcription	Colonic Mucosa	Colon
9	chr4:125593200-125609000	Weak transcription	Brain Germinal Matrix	brain
10	chr4:125593400-125606800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:125593400-125607400	Weak transcription	Lung	lung
12	chr4:125593400-125621800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:125593400-125629800	Weak transcription	Aorta	Aorta
14	chr4:125593400-125629800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:125593400-125631200	Weak transcription	Thymus	Thymus
16	chr4:125593600-125607000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:125593600-125607600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:125593600-125609800	Weak transcription	Fetal Kidney	kidney
19	chr4:125593600-125610400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:125593600-125617400	Weak transcription	Fetal Intestine Large	intestine
21	chr4:125593600-125629600	Weak transcription	HSMMtube	muscle
22	chr4:125593600-125631000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr4:125593800-125610200	Weak transcription	Primary T cells from cord blood	blood
24	chr4:125594200-125625400	Weak transcription	Hela-S3	cervix
25	chr4:125594200-125631200	Weak transcription	Fetal Thymus	thymus
26	chr4:125594600-125616600	Weak transcription	A549	lung
27	chr4:125596000-125609800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr4:125597400-125631200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr4:125599200-125627800	Weak transcription	Placenta	Placenta
30	chr4:125599400-125607400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr4:125599600-125609000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:125600000-125607800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr4:125600000-125608000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr4:125600000-125609000	Weak transcription	Fetal Lung	lung
35	chr4:125600000-125609000	Weak transcription	HSMM	muscle
36	chr4:125600000-125609200	Weak transcription	Osteobl	bone
37	chr4:125600000-125618000	Weak transcription	NHDF-Ad	bronchial
38	chr4:125600000-125618200	Weak transcription	Dnd41	blood
39	chr4:125600000-125618600	Weak transcription	Fetal Brain Female	brain
40	chr4:125600200-125613600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:125600200-125616600	Weak transcription	Adipose Nuclei	Adipose
42	chr4:125600600-125609000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:125600800-125607000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr4:125600800-125607600	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr4:125601000-125607200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr4:125601000-125607400	Weak transcription	NH-A	brain
47	chr4:125601000-125612800	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr4:125601200-125612800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr4:125601200-125617000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:125601600-125621200	Weak transcription	Fetal Heart	heart

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