Variant report

Variant	rs13144437
Chromosome Location	chr4:125616907-125616908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125615666..125618502-chr4:125622718..125626356,3	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10006577	0.85[ASN][1000 genomes]
rs10006893	0.85[CHB][hapmap];0.92[MEX][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10013174	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10018651	0.85[ASN][1000 genomes]
rs10028864	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1015968	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1016382	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs1016383	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10518442	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12331436	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13104292	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13107141	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13110120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13110982	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13117832	0.85[ASN][1000 genomes]
rs13130626	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150707	0.91[ASN][1000 genomes]
rs1472290	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1495126	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1495127	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1498024	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17008475	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008478	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1874748	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1995135	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2036204	0.86[CHB][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];0.92[MEX][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs220738	0.85[ASN][1000 genomes]
rs2242378	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28399027	0.87[ASN][1000 genomes]
rs3172524	0.92[CHB][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];0.92[MEX][hapmap];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34348208	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34748024	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34877613	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35053443	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35180555	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35282937	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35333384	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35463553	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35958270	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36177260	0.85[ASN][1000 genomes]
rs3733471	0.85[ASN][1000 genomes]
rs4833999	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4834000	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56902532	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59841071	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534448	0.85[ASN][1000 genomes]
rs6815682	0.91[ASN][1000 genomes]
rs6816263	0.92[CHB][hapmap];0.84[JPT][hapmap];0.97[ASN][1000 genomes]
rs6849375	0.91[ASN][1000 genomes]
rs6849813	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307543	0.85[ASN][1000 genomes]
rs9307544	0.85[ASN][1000 genomes]
rs9999425	0.84[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13144437	ANKRD50	cis	parietal	SCAN
rs13144437	NUDT6	cis	cerebellum	SCAN

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125593000-125618200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:125593000-125621800	Weak transcription	Fetal Stomach	stomach
3	chr4:125593000-125631200	Weak transcription	Esophagus	oesophagus
4	chr4:125593400-125621800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:125593400-125629800	Weak transcription	Aorta	Aorta
6	chr4:125593400-125629800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:125593400-125631200	Weak transcription	Thymus	Thymus
8	chr4:125593600-125617400	Weak transcription	Fetal Intestine Large	intestine
9	chr4:125593600-125629600	Weak transcription	HSMMtube	muscle
10	chr4:125593600-125631000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:125594200-125625400	Weak transcription	Hela-S3	cervix
12	chr4:125594200-125631200	Weak transcription	Fetal Thymus	thymus
13	chr4:125597400-125631200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr4:125599200-125627800	Weak transcription	Placenta	Placenta
15	chr4:125600000-125618000	Weak transcription	NHDF-Ad	bronchial
16	chr4:125600000-125618200	Weak transcription	Dnd41	blood
17	chr4:125600000-125618600	Weak transcription	Fetal Brain Female	brain
18	chr4:125601200-125617000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:125601600-125621200	Weak transcription	Fetal Heart	heart
20	chr4:125606000-125624400	Weak transcription	Fetal Brain Male	brain
21	chr4:125606000-125631000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr4:125606200-125629600	Weak transcription	K562	blood
23	chr4:125606400-125621800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:125607800-125621200	Weak transcription	NH-A	brain
25	chr4:125607800-125631200	Weak transcription	Left Ventricle	heart
26	chr4:125608000-125618600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:125608000-125621200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr4:125608200-125618200	Weak transcription	HMEC	breast
29	chr4:125608200-125621800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:125608200-125629800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr4:125608400-125618600	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr4:125608400-125621400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr4:125608800-125617600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr4:125609600-125618600	Weak transcription	Brain Germinal Matrix	brain
35	chr4:125609800-125617400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:125610600-125621200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr4:125611000-125618400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr4:125611000-125618800	Weak transcription	Osteobl	bone
39	chr4:125611400-125629800	Weak transcription	Fetal Kidney	kidney
40	chr4:125611600-125632400	Weak transcription	Stomach Mucosa	stomach
41	chr4:125612400-125618800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr4:125613200-125618200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr4:125613400-125618600	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr4:125614000-125619400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:125614200-125617400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr4:125614200-125617600	Weak transcription	Fetal Lung	lung
47	chr4:125614200-125621200	Weak transcription	HSMM	muscle
48	chr4:125614400-125617200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:125614400-125618000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr4:125614400-125618800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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