Variant report

Variant	rs1498024
Chromosome Location	chr4:125555024-125555025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10006577	0.87[ASN][1000 genomes]
rs10006893	0.85[CHB][hapmap];0.87[ASN][1000 genomes]
rs10013174	0.84[ASN][1000 genomes]
rs10018651	0.87[ASN][1000 genomes]
rs10028864	0.85[ASN][1000 genomes]
rs1015968	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1016382	0.87[CHB][hapmap];0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1016383	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518442	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12331436	0.85[ASN][1000 genomes]
rs13104292	0.83[ASN][1000 genomes]
rs13107141	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13110120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13110982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13117832	0.87[ASN][1000 genomes]
rs13130626	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13144437	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13150707	0.93[ASN][1000 genomes]
rs1472290	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495126	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495127	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17008475	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17008478	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1874748	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995135	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036204	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs220738	0.87[ASN][1000 genomes]
rs2242378	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28399027	0.85[ASN][1000 genomes]
rs3172524	0.92[CHB][hapmap];0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs34348208	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34748024	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34877613	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35053443	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35180555	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35282937	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35333384	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35463553	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35958270	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36177260	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3733471	0.87[ASN][1000 genomes]
rs4833999	0.85[ASN][1000 genomes]
rs4834000	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56902532	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59841071	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534448	0.87[ASN][1000 genomes]
rs6815682	0.93[ASN][1000 genomes]
rs6816263	0.93[CHB][hapmap];0.95[ASN][1000 genomes]
rs6849375	0.93[ASN][1000 genomes]
rs6849813	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9307543	0.87[ASN][1000 genomes]
rs9307544	0.87[ASN][1000 genomes]
rs9999425	0.86[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125539000-125561200	Weak transcription	Ovary	ovary
2	chr4:125539200-125572400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:125540000-125590200	Weak transcription	Aorta	Aorta
4	chr4:125543600-125584200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:125545000-125572400	Weak transcription	Left Ventricle	heart
6	chr4:125547000-125571400	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:125552000-125555200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:125552200-125555200	Enhancers	Hela-S3	cervix
9	chr4:125552400-125555200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:125552400-125555400	Enhancers	NHEK	skin
11	chr4:125552400-125557000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:125552400-125558800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:125552800-125555200	Enhancers	HMEC	breast
14	chr4:125552800-125555400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:125553200-125555400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:125553200-125560200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:125553400-125556000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:125553400-125557400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:125553400-125557800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:125553400-125557800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:125553400-125561000	Weak transcription	NHLF	lung
22	chr4:125553400-125563000	Weak transcription	HSMM	muscle
23	chr4:125553400-125566000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:125553400-125590200	Weak transcription	HSMMtube	muscle
25	chr4:125553600-125556200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr4:125553600-125561000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr4:125553600-125561200	Weak transcription	NH-A	brain
28	chr4:125553600-125561200	Weak transcription	Osteobl	bone
29	chr4:125553600-125564000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr4:125553600-125587600	Weak transcription	Adipose Nuclei	Adipose
31	chr4:125553800-125565800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:125554000-125558200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:125554000-125558600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr4:125554000-125565800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:125554000-125572000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:125554000-125591600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr4:125554400-125555400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:125554400-125556800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr4:125554600-125555400	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr4:125554600-125555600	Strong transcription	HUVEC	blood vessel
41	chr4:125554600-125555800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:125554600-125558800	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr4:125554800-125556200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr4:125554800-125557000	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr4:125554800-125591200	Weak transcription	Fetal Kidney	kidney
46	chr4:125555000-125555200	Enhancers	Fetal Lung	lung
47	chr4:125555000-125556000	Weak transcription	H1 Cell Line	embryonic stem cell

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