Variant report

Variant	rs34877613
Chromosome Location	chr4:125601107-125601108
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:125594517..125597367-chr4:125600729..125603597,2	K562	blood:
2	chr4:125600002..125602938-chr4:125630037..125632620,2	K562	blood:
3	chr4:125588728..125590855-chr4:125598883..125601495,2	K562	blood:
4	chr4:125600079..125602799-chr4:125632630..125634935,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10006577	0.85[ASN][1000 genomes]
rs10006893	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10013174	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10018651	0.85[ASN][1000 genomes]
rs10028864	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1015968	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1016382	0.85[ASN][1000 genomes]
rs1016383	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10518442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12331436	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13104292	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13107141	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13110120	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13110982	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13117832	0.85[ASN][1000 genomes]
rs13130626	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13144437	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150707	0.91[ASN][1000 genomes]
rs1472290	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1495126	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1495127	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1498024	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17008475	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1874748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1995135	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2036204	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs220738	0.85[ASN][1000 genomes]
rs2242378	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28399027	0.87[ASN][1000 genomes]
rs3172524	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34348208	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34748024	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35053443	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35180555	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35282937	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35333384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35463553	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35958270	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36177260	0.85[ASN][1000 genomes]
rs3733471	0.85[ASN][1000 genomes]
rs4833999	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4834000	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56902532	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59841071	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534448	0.85[ASN][1000 genomes]
rs6815682	0.91[ASN][1000 genomes]
rs6816263	0.97[ASN][1000 genomes]
rs6849375	0.91[ASN][1000 genomes]
rs6849813	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307543	0.85[ASN][1000 genomes]
rs9307544	0.85[ASN][1000 genomes]
rs9999425	0.84[ASN][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125590600-125605600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:125592400-125611400	Weak transcription	HepG2	liver
3	chr4:125593000-125601400	Weak transcription	Spleen	Spleen
4	chr4:125593000-125605600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:125593000-125606200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:125593000-125608400	Weak transcription	Pancreas	Pancrea
7	chr4:125593000-125618200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:125593000-125621800	Weak transcription	Fetal Stomach	stomach
9	chr4:125593000-125631200	Weak transcription	Esophagus	oesophagus
10	chr4:125593200-125602200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr4:125593200-125605600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:125593200-125606000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:125593200-125607400	Weak transcription	Gastric	stomach
14	chr4:125593200-125607800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:125593200-125608800	Weak transcription	Colonic Mucosa	Colon
16	chr4:125593200-125609000	Weak transcription	Brain Germinal Matrix	brain
17	chr4:125593400-125601200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:125593400-125605200	Weak transcription	Fetal Brain Male	brain
19	chr4:125593400-125605600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr4:125593400-125605600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:125593400-125605600	Weak transcription	K562	blood
22	chr4:125593400-125606800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:125593400-125607400	Weak transcription	Lung	lung
24	chr4:125593400-125621800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:125593400-125629800	Weak transcription	Aorta	Aorta
26	chr4:125593400-125629800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr4:125593400-125631200	Weak transcription	Thymus	Thymus
28	chr4:125593600-125601400	Weak transcription	Brain Anterior Caudate	brain
29	chr4:125593600-125601400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr4:125593600-125601800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:125593600-125605400	Weak transcription	Colon Smooth Muscle	Colon
32	chr4:125593600-125605600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr4:125593600-125605600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr4:125593600-125606000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr4:125593600-125606000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr4:125593600-125606200	Weak transcription	Left Ventricle	heart
37	chr4:125593600-125607000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr4:125593600-125607600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr4:125593600-125609800	Weak transcription	Fetal Kidney	kidney
40	chr4:125593600-125610400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr4:125593600-125617400	Weak transcription	Fetal Intestine Large	intestine
42	chr4:125593600-125629600	Weak transcription	HSMMtube	muscle
43	chr4:125593600-125631000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr4:125593800-125601400	Weak transcription	NHLF	lung
45	chr4:125593800-125606000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr4:125593800-125610200	Weak transcription	Primary T cells from cord blood	blood
47	chr4:125594200-125625400	Weak transcription	Hela-S3	cervix
48	chr4:125594200-125631200	Weak transcription	Fetal Thymus	thymus
49	chr4:125594600-125616600	Weak transcription	A549	lung
50	chr4:125594800-125605200	Weak transcription	NHEK	skin

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