Variant report

Variant	rs12331436
Chromosome Location	chr4:125583883-125583884
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125582134..125584431-chr4:125593027..125594996,2	K562	blood:
2	chr4:125582824..125584417-chr4:125632910..125635620,2	K562	blood:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10006577	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10006893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10013174	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10018651	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10028864	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1015968	0.85[ASN][1000 genomes]
rs1016382	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1016383	0.85[ASN][1000 genomes]
rs10518442	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13104292	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13107141	0.84[ASN][1000 genomes]
rs13110120	0.82[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13110982	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13117832	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13130626	0.82[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs13144437	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1472290	0.85[ASN][1000 genomes]
rs1495126	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1495127	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1498024	0.85[ASN][1000 genomes]
rs17008475	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17008478	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1874748	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1995135	0.85[ASN][1000 genomes]
rs2036204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs220738	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2242378	0.82[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28399027	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs313884	0.84[AFR][1000 genomes]
rs3172524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34348208	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34748024	0.85[ASN][1000 genomes]
rs34877613	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35053443	0.85[ASN][1000 genomes]
rs35180555	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35282937	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35333384	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35463553	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35958270	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs36177260	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3733471	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4833999	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4834000	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56902532	0.85[ASN][1000 genomes]
rs59841071	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6534448	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6816263	0.81[ASN][1000 genomes]
rs6849813	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9307543	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9307544	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9999425	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125540000-125590200	Weak transcription	Aorta	Aorta
2	chr4:125543600-125584200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:125553400-125590200	Weak transcription	HSMMtube	muscle
4	chr4:125553600-125587600	Weak transcription	Adipose Nuclei	Adipose
5	chr4:125554000-125591600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:125554800-125591200	Weak transcription	Fetal Kidney	kidney
7	chr4:125555400-125586800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:125556800-125591200	Weak transcription	Esophagus	oesophagus
9	chr4:125560200-125586600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:125561400-125590200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:125562200-125591400	Weak transcription	NHLF	lung
12	chr4:125563600-125584400	Weak transcription	NHDF-Ad	bronchial
13	chr4:125563600-125587800	Weak transcription	Osteobl	bone
14	chr4:125563800-125589800	Weak transcription	NH-A	brain
15	chr4:125564600-125589800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:125564800-125590000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:125566600-125587000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr4:125566600-125590200	Weak transcription	Brain Germinal Matrix	brain
19	chr4:125566800-125590000	Weak transcription	NHEK	skin
20	chr4:125568600-125590000	Weak transcription	Fetal Lung	lung
21	chr4:125569200-125591000	Weak transcription	Gastric	stomach
22	chr4:125570600-125587000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:125570600-125591000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:125571000-125587400	Weak transcription	Placenta	Placenta
25	chr4:125571000-125590000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr4:125571200-125592000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr4:125571400-125591200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr4:125571800-125587200	Weak transcription	Fetal Heart	heart
29	chr4:125572400-125590000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:125572600-125587000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:125572600-125587200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr4:125572800-125589800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:125572800-125589800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:125572800-125590200	Weak transcription	Left Ventricle	heart
35	chr4:125572800-125591200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:125572800-125591200	Weak transcription	Fetal Intestine Small	intestine
37	chr4:125573000-125590200	Weak transcription	Fetal Stomach	stomach
38	chr4:125573200-125587200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:125573200-125590200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr4:125573400-125587200	Weak transcription	Fetal Muscle Leg	muscle
41	chr4:125579600-125590000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr4:125580400-125590000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr4:125580800-125584200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr4:125583000-125590200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr4:125583200-125585600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr4:125583400-125587400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr4:125583400-125591800	Weak transcription	Psoas Muscle	Psoas
48	chr4:125583400-125595000	Strong transcription	HUVEC	blood vessel
49	chr4:125583800-125585400	Strong transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links