Variant report

Variant	rs315409
Chromosome Location	chr6:153532572-153532573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12189959	0.86[AFR][1000 genomes]
rs315420	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs315421	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs317073	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs317074	0.98[ASN][1000 genomes]
rs583957	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6557275	0.86[AFR][1000 genomes]
rs7341272	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432967	chr6:153427517-153698915	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525235	chr6:153515011-153573445	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:153529600-153533200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:153530600-153533200	Enhancers	Primary T cells from cord blood	blood
3	chr6:153530800-153532600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:153530800-153532800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:153531800-153535400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:153532400-153532600	Flanking Active TSS	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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