Variant report

Variant	rs317073
Chromosome Location	chr6:153530831-153530832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12189959	0.88[AFR][1000 genomes]
rs315409	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs317074	0.95[ASN][1000 genomes]
rs583957	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6557275	0.88[AFR][1000 genomes]
rs7341272	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432967	chr6:153427517-153698915	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525235	chr6:153515011-153573445	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:153529600-153531200	Flanking Active TSS	Dnd41	blood
2	chr6:153529600-153533200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:153529800-153532200	Enhancers	Fetal Thymus	thymus
4	chr6:153530200-153531600	Weak transcription	HSMMtube	muscle
5	chr6:153530600-153533200	Enhancers	Primary T cells from cord blood	blood
6	chr6:153530800-153531000	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:153530800-153531800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:153530800-153532000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:153530800-153532000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr6:153530800-153532000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:153530800-153532400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:153530800-153532600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr6:153530800-153532800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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