Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10103838	0.81[EUR][1000 genomes]
rs11775142	0.81[EUR][1000 genomes]
rs11778219	0.86[AFR][1000 genomes]
rs11778608	0.86[AFR][1000 genomes]
rs12155947	0.94[CEU][hapmap]
rs12386885	0.86[AFR][1000 genomes]
rs1372171	0.94[CEU][hapmap]
rs1372172	0.94[CEU][hapmap]
rs1372173	0.93[CEU][hapmap]
rs1441241	0.94[CEU][hapmap]
rs1441242	0.93[CEU][hapmap]
rs17619860	0.86[AFR][1000 genomes]
rs188808	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2361479	0.86[AFR][1000 genomes]
rs315961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs315968	1.00[CEU][hapmap]
rs315970	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs315971	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs315975	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4960986	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs6471449	0.83[EUR][1000 genomes]
rs6471476	0.93[CEU][hapmap]
rs6471482	0.93[CEU][hapmap]
rs6997641	0.93[CEU][hapmap]
rs766451	0.94[CEU][hapmap]
rs7812988	0.93[CEU][hapmap]
rs9297946	0.93[CEU][hapmap]
rs970633	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87736000-87736800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:87736000-87739200	Enhancers	HUVEC	blood vessel
3	chr8:87736200-87736600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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