Variant report
| Variant | rs315968 |
|---|---|
| Chromosome Location | chr8:87709335-87709336 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12155947 | 0.93[CEU][hapmap] |
| rs1372171 | 0.93[CEU][hapmap] |
| rs1372172 | 0.93[CEU][hapmap] |
| rs1372173 | 0.93[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap] |
| rs1441241 | 0.93[CEU][hapmap] |
| rs1441242 | 0.93[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap] |
| rs188808 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs315959 | 1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs315961 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs315970 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs315971 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs315975 | 1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4960986 | 0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs6471449 | 0.84[EUR][1000 genomes] |
| rs6471476 | 0.93[CEU][hapmap] |
| rs6471482 | 0.93[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap] |
| rs6997641 | 0.93[CEU][hapmap] |
| rs766451 | 0.93[CEU][hapmap] |
| rs7812988 | 0.93[CEU][hapmap] |
| rs9297946 | 0.93[CEU][hapmap] |
| rs970633 | 0.93[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023510 | chr8:87429001-87874948 | Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv891151 | chr8:87690019-87776019 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1026794 | chr8:87698639-87957840 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv539662 | chr8:87698639-87957840 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
