Variant report

Variant	rs3176361
Chromosome Location	chr6:36655967-36655968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36650715..36656032-chr6:36664945..36667924,5	MCF-7	breast:
2	chr6:36581224..36597272-chr6:36642199..36659412,120	MCF-7	breast:
3	chr6:36650647..36652675-chr6:36655883..36658117,2	MCF-7	breast:
4	chr6:36645102..36656546-chr6:36717974..36730993,29	MCF-7	breast:
5	chr6:36645354..36650870-chr6:36653418..36656910,6	K562	blood:
6	chr6:36655048..36657495-chr6:36690151..36694122,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124772	Chromatin interaction
ENSG00000124762	Chromatin interaction
ENSG00000263894	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1059234	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12528248	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1801270	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3176345	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4714005	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7757749	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7761648	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs876581	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36650400-36656600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36650800-36656000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:36650800-36659600	Weak transcription	Right Atrium	heart
4	chr6:36651200-36656000	Strong transcription	Muscle Satellite Cultured Cells	--
5	chr6:36651200-36656200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:36651200-36660000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:36651600-36657000	Enhancers	Primary B cells from cord blood	blood
8	chr6:36651600-36659200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:36651800-36656800	Strong transcription	Fetal Intestine Small	intestine
10	chr6:36651800-36658800	Weak transcription	Fetal Heart	heart
11	chr6:36652400-36656200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:36652400-36656200	Strong transcription	Left Ventricle	heart
13	chr6:36653400-36656000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:36653400-36656800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:36653600-36656000	Strong transcription	HUVEC	blood vessel
16	chr6:36653800-36657000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:36654000-36656400	Weak transcription	Psoas Muscle	Psoas
18	chr6:36654200-36656000	Strong transcription	Placenta	Placenta
19	chr6:36654200-36659400	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr6:36654600-36656400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:36654600-36659400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:36654600-36659600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr6:36654600-36659600	Weak transcription	Fetal Thymus	thymus
24	chr6:36654800-36656000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:36654800-36656400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:36654800-36656400	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:36654800-36659600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:36654800-36660200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:36655000-36656000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr6:36655000-36656200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:36655000-36656600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:36655000-36656600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:36655000-36656600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr6:36655000-36656600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:36655000-36656600	Weak transcription	Brain Anterior Caudate	brain
36	chr6:36655000-36656800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr6:36655000-36656800	Weak transcription	Brain Angular Gyrus	brain
38	chr6:36655000-36656800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:36655000-36657000	Weak transcription	Small Intestine	intestine
40	chr6:36655000-36657600	Weak transcription	HepG2	liver
41	chr6:36655000-36657800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr6:36655000-36658400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:36655000-36658800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:36655000-36658800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:36655000-36659200	Weak transcription	Spleen	Spleen
46	chr6:36655000-36659400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:36655000-36659400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr6:36655000-36659600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr6:36655000-36659600	Weak transcription	Right Ventricle	heart
50	chr6:36655000-36660000	Weak transcription	Fetal Muscle Trunk	muscle

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