Variant report

Variant	rs876581
Chromosome Location	chr6:36655445-36655446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36650715..36656032-chr6:36664945..36667924,5	MCF-7	breast:
2	chr6:36581224..36597272-chr6:36642199..36659412,120	MCF-7	breast:
3	chr6:36645102..36656546-chr6:36717974..36730993,29	MCF-7	breast:
4	chr6:36645354..36650870-chr6:36653418..36656910,6	K562	blood:
5	chr6:36655048..36657495-chr6:36690151..36694122,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction
ENSG00000124772	Chromatin interaction
ENSG00000263894	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10214861	1.00[CEU][hapmap]
rs10456441	0.85[JPT][hapmap]
rs10456442	0.85[JPT][hapmap]
rs10456443	0.85[JPT][hapmap]
rs1059234	1.00[CEU][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11964420	1.00[CEU][hapmap]
rs11967202	1.00[CEU][hapmap]
rs12203953	0.85[JPT][hapmap]
rs12206430	0.90[JPT][hapmap]
rs12210094	0.85[JPT][hapmap]
rs12524435	0.85[JPT][hapmap]
rs12528248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530170	0.85[JPT][hapmap]
rs1801270	0.83[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs236378	1.00[CEU][hapmap]
rs3176345	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3176361	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3829963	0.90[JPT][hapmap]
rs4464789	0.85[JPT][hapmap]
rs4713993	0.85[JPT][hapmap]
rs4713998	0.88[MEX][hapmap]
rs4714005	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6457932	0.85[JPT][hapmap]
rs6916443	1.00[CEU][hapmap]
rs6920453	0.85[JPT][hapmap]
rs6931097	0.90[JPT][hapmap]
rs7747806	1.00[CEU][hapmap]
rs7757749	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7761648	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9349002	0.90[JPT][hapmap]
rs9349005	0.90[JPT][hapmap]
rs9366912	0.85[JPT][hapmap]
rs9470400	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36650400-36656600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36650600-36655600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:36650600-36655600	Strong transcription	HSMMtube	muscle
4	chr6:36650600-36655600	Strong transcription	NH-A	brain
5	chr6:36650800-36656000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:36650800-36659600	Weak transcription	Right Atrium	heart
7	chr6:36651200-36655600	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:36651200-36655600	Genic enhancers	Primary B cells from peripheral blood	blood
9	chr6:36651200-36655600	Strong transcription	Fetal Stomach	stomach
10	chr6:36651200-36655600	Strong transcription	HSMM	muscle
11	chr6:36651200-36655800	Strong transcription	NHDF-Ad	bronchial
12	chr6:36651200-36656000	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr6:36651200-36656200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:36651200-36660000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:36651600-36655600	Strong transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:36651600-36657000	Enhancers	Primary B cells from cord blood	blood
17	chr6:36651600-36659200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:36651800-36655600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:36651800-36655600	Strong transcription	Colonic Mucosa	Colon
20	chr6:36651800-36655600	Strong transcription	Ovary	ovary
21	chr6:36651800-36655800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:36651800-36656800	Strong transcription	Fetal Intestine Small	intestine
23	chr6:36651800-36658800	Weak transcription	Fetal Heart	heart
24	chr6:36652000-36655600	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:36652200-36655600	Strong transcription	Fetal Intestine Large	intestine
26	chr6:36652400-36655600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:36652400-36655800	Strong transcription	Lung	lung
28	chr6:36652400-36656200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:36652400-36656200	Strong transcription	Left Ventricle	heart
30	chr6:36653400-36656000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:36653400-36656800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:36653600-36656000	Strong transcription	HUVEC	blood vessel
33	chr6:36653800-36657000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:36654000-36655600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:36654000-36656400	Weak transcription	Psoas Muscle	Psoas
36	chr6:36654200-36655600	Strong transcription	Adipose Nuclei	Adipose
37	chr6:36654200-36656000	Strong transcription	Placenta	Placenta
38	chr6:36654200-36659400	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:36654400-36655600	Strong transcription	Fetal Muscle Leg	muscle
40	chr6:36654600-36656400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr6:36654600-36659400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr6:36654600-36659600	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr6:36654600-36659600	Weak transcription	Fetal Thymus	thymus
44	chr6:36654800-36656000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:36654800-36656400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:36654800-36656400	Weak transcription	Brain Hippocampus Middle	brain
47	chr6:36654800-36659600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:36654800-36660200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr6:36655000-36655600	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr6:36655000-36655800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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