Variant report

Variant	rs7747806
Chromosome Location	chr6:36798440-36798441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36798286..36801016-chr6:36828535..36830113,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10214861	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1059234	1.00[CEU][hapmap]
rs11964420	1.00[CEU][hapmap]
rs11967202	1.00[CEU][hapmap]
rs11967728	1.00[CEU][hapmap]
rs11969196	1.00[EUR][1000 genomes]
rs11969791	1.00[EUR][1000 genomes]
rs12528248	1.00[CEU][hapmap]
rs236378	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs236379	0.86[EUR][1000 genomes]
rs36039991	1.00[EUR][1000 genomes]
rs41272190	1.00[EUR][1000 genomes]
rs58806396	1.00[EUR][1000 genomes]
rs6906834	1.00[AMR][1000 genomes]
rs6916443	1.00[CEU][hapmap]
rs6929503	1.00[AMR][1000 genomes]
rs7744324	1.00[EUR][1000 genomes]
rs7757749	1.00[CEU][hapmap]
rs7761648	1.00[CEU][hapmap]
rs7767776	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7772906	1.00[AMR][1000 genomes]
rs876581	1.00[CEU][hapmap]
rs9462221	1.00[EUR][1000 genomes]
rs9462228	1.00[EUR][1000 genomes]
rs9470400	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9470406	1.00[EUR][1000 genomes]
rs9470409	1.00[EUR][1000 genomes]
rs9470410	1.00[EUR][1000 genomes]
rs9470415	1.00[EUR][1000 genomes]
rs9470427	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36788400-36802400	Weak transcription	Fetal Kidney	kidney
2	chr6:36789800-36802200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:36790600-36799400	Enhancers	Fetal Muscle Leg	muscle
4	chr6:36791200-36805800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:36795200-36798600	Enhancers	HUVEC	blood vessel
6	chr6:36795200-36802600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:36795400-36798800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:36795800-36801800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:36795800-36802200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:36796400-36802200	Weak transcription	Placenta	Placenta
11	chr6:36797000-36800000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:36797200-36798600	Enhancers	Fetal Intestine Small	intestine
13	chr6:36797400-36798600	Enhancers	Fetal Brain Male	brain
14	chr6:36797600-36798600	Enhancers	Liver	Liver
15	chr6:36797600-36798600	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr6:36797600-36798600	Enhancers	Fetal Intestine Large	intestine
17	chr6:36797600-36798600	Enhancers	Fetal Lung	lung
18	chr6:36797600-36798600	Enhancers	Stomach Mucosa	stomach
19	chr6:36797600-36798800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr6:36797600-36798800	Enhancers	Brain Hippocampus Middle	brain
21	chr6:36797600-36798800	Enhancers	Fetal Brain Female	brain
22	chr6:36797600-36798800	Enhancers	Fetal Stomach	stomach
23	chr6:36797600-36798800	Enhancers	Right Atrium	heart
24	chr6:36797600-36798800	Flanking Active TSS	HepG2	liver
25	chr6:36797800-36798600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:36797800-36798600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:36797800-36798600	Enhancers	Aorta	Aorta
28	chr6:36797800-36798600	Flanking Active TSS	Brain Germinal Matrix	brain
29	chr6:36797800-36798600	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr6:36797800-36798600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:36797800-36798600	Enhancers	Colonic Mucosa	Colon
32	chr6:36797800-36798600	Enhancers	Esophagus	oesophagus
33	chr6:36797800-36798600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
34	chr6:36797800-36798600	Enhancers	Left Ventricle	heart
35	chr6:36797800-36798600	Enhancers	Lung	lung
36	chr6:36797800-36798600	Enhancers	Ovary	ovary
37	chr6:36797800-36798600	Enhancers	Pancreas	Pancrea
38	chr6:36797800-36798600	Enhancers	Psoas Muscle	Psoas
39	chr6:36797800-36798600	Enhancers	Rectal Smooth Muscle	rectum
40	chr6:36797800-36798600	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr6:36797800-36798800	Enhancers	Brain Anterior Caudate	brain
42	chr6:36797800-36798800	Enhancers	Colon Smooth Muscle	Colon
43	chr6:36798000-36798600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:36798000-36798600	Enhancers	Brain Angular Gyrus	brain
45	chr6:36798000-36798600	Enhancers	Right Ventricle	heart
46	chr6:36798000-36798600	Enhancers	Small Intestine	intestine
47	chr6:36798200-36798600	Enhancers	Fetal Muscle Trunk	muscle
48	chr6:36798200-36799000	Enhancers	Fetal Heart	heart
49	chr6:36798200-36802600	Weak transcription	Brain Substantia Nigra	brain
50	chr6:36798400-36798600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin

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