Variant report

Variant	rs41272190
Chromosome Location	chr6:36790924-36790925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36789119..36791202-chr6:36794316..36796954,2	MCF-7	breast:
2	chr6:36779359..36780999-chr6:36789470..36790990,2	K562	blood:
3	chr6:36185667..36187544-chr6:36788292..36790992,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10214861	1.00[EUR][1000 genomes]
rs11969196	1.00[EUR][1000 genomes]
rs11969791	1.00[EUR][1000 genomes]
rs236378	1.00[EUR][1000 genomes]
rs236379	0.86[EUR][1000 genomes]
rs36039991	1.00[EUR][1000 genomes]
rs58806396	1.00[EUR][1000 genomes]
rs7744324	1.00[EUR][1000 genomes]
rs7747806	1.00[EUR][1000 genomes]
rs7767776	1.00[EUR][1000 genomes]
rs9462221	1.00[EUR][1000 genomes]
rs9462228	1.00[EUR][1000 genomes]
rs9470400	1.00[EUR][1000 genomes]
rs9470406	1.00[EUR][1000 genomes]
rs9470409	1.00[EUR][1000 genomes]
rs9470410	1.00[EUR][1000 genomes]
rs9470415	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv3396486	chr6:36788274-36793172	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36777000-36797800	Weak transcription	Pancreas	Pancrea
2	chr6:36779000-36794000	Weak transcription	Brain Germinal Matrix	brain
3	chr6:36779400-36797600	Weak transcription	Fetal Brain Female	brain
4	chr6:36781600-36794200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:36787000-36791200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:36787400-36796400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:36788000-36791000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:36788400-36802400	Weak transcription	Fetal Kidney	kidney
9	chr6:36788600-36792800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:36788800-36791000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:36788800-36792000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:36788800-36793200	Enhancers	Adipose Nuclei	Adipose
13	chr6:36788800-36797200	Enhancers	Right Atrium	heart
14	chr6:36789000-36791800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:36789200-36792400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr6:36789200-36796400	Enhancers	Left Ventricle	heart
17	chr6:36789400-36792200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:36789400-36793200	Weak transcription	Fetal Intestine Small	intestine
19	chr6:36789400-36794200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:36789400-36794400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:36789400-36796000	Enhancers	K562	blood
22	chr6:36789600-36791400	Weak transcription	Spleen	Spleen
23	chr6:36789600-36794000	Enhancers	HUVEC	blood vessel
24	chr6:36789600-36794600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr6:36789800-36794000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:36789800-36794200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:36789800-36794200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:36789800-36794600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:36789800-36802200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr6:36790000-36794200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr6:36790000-36794400	Weak transcription	HMEC	breast
32	chr6:36790000-36794600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:36790200-36794400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:36790400-36791000	Enhancers	NH-A	brain
35	chr6:36790400-36791200	Enhancers	Lung	lung
36	chr6:36790400-36793800	Weak transcription	Brain Anterior Caudate	brain
37	chr6:36790400-36794600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
38	chr6:36790600-36791000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:36790600-36791000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:36790600-36791000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:36790600-36791200	Enhancers	Fetal Stomach	stomach
42	chr6:36790600-36791200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
43	chr6:36790600-36791400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:36790600-36794200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:36790600-36794400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr6:36790600-36799400	Enhancers	Fetal Muscle Leg	muscle
47	chr6:36790800-36791000	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr6:36790800-36791000	Enhancers	Placenta	Placenta
49	chr6:36790800-36791200	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:36790800-36791200	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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